RNA id: trnaq-uug_2


Basic Information

Item Value
RNA id trnaq-uug_2
length 72
RNA type tRNA
GC content 0.44
exon number 1
gene id trnaq-uug_2
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23932866 ~ 23932937 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTCCATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGGAatctgagttcaaatctcagtgGAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221202 lncRNA upstream 104964 23826676 ~ 23827902 (+) True G186882
TU221186 lncRNA upstream 131904 23795730 ~ 23800962 (+) True G186868
TU221181 lncRNA upstream 140739 23791920 ~ 23792127 (+) True G186864
TU221123 lncRNA upstream 218495 23712033 ~ 23714371 (+) True G186814
TU221100 lncRNA upstream 256298 23669018 ~ 23676568 (+) True G186798
TU221284 lncRNA downstream 220178 24153115 ~ 24203702 (+) True G186949
TU221288 lncRNA downstream 222843 24155780 ~ 24162236 (+) True G186951
TU221282 lncRNA downstream 223665 24156602 ~ 24203702 (+) False G186949
TU221283 lncRNA downstream 224185 24157122 ~ 24203702 (+) False G186949
TU221319 lncRNA downstream 228331 24161268 ~ 24186454 (+) True G186976
XM_034308759.1 mRNA upstream 6722 23835703 ~ 23926144 (+) True dennd1b
XM_026912961.2 mRNA upstream 459297 23413029 ~ 23473569 (+) True LOC113526144
XM_026912969.2 mRNA upstream 459297 23413029 ~ 23473569 (+) False LOC113526144
XM_034308532.1 mRNA upstream 459297 23413029 ~ 23473569 (+) False LOC113526144
XM_034308530.1 mRNA upstream 465665 23413029 ~ 23467201 (+) False LOC113526144
XM_026917310.2 mRNA downstream 45936 23978873 ~ 24003792 (+) True aspm
XM_026917314.2 mRNA downstream 45936 23978873 ~ 24003792 (+) False aspm
XM_026913018.2 mRNA downstream 184881 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA downstream 184881 24117818 ~ 24138641 (+) False b3galt2
XM_026912944.2 mRNA downstream 184881 24117818 ~ 24138641 (+) False b3galt2
trnap-agg_1 other upstream 1973907 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 2722327 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 3781972 20149971 ~ 20150894 (+) True G184979
XR_003403385.2 other upstream 4061403 19865798 ~ 19871463 (+) True ccl44
XR_004579107.1 other upstream 4098452 19827986 ~ 19834414 (+) False tax1bp3
trnaq-cug_11 other downstream 1195 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_3 other downstream 1698 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-uug_4 other downstream 4080 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 5372 23938309 ~ 23938380 (+) True trnaq-cug_12
trnaq-uug_5 other downstream 5880 23938817 ~ 23938888 (+) True trnaq-uug_5