RNA id: trnaq-uug_3


Basic Information

Item Value
RNA id trnaq-uug_3
length 72
RNA type tRNA
GC content 0.47
exon number 1
gene id trnaq-uug_3
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23934635 ~ 23934706 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTCCATGGTGTAATGGTTAGCACTCTGGGCTTTGAATCCAGGAATCTGAGTTCAAATCTCGGTGGAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221202 lncRNA upstream 106733 23826676 ~ 23827902 (+) True G186882
TU221186 lncRNA upstream 133673 23795730 ~ 23800962 (+) True G186868
TU221181 lncRNA upstream 142508 23791920 ~ 23792127 (+) True G186864
TU221123 lncRNA upstream 220264 23712033 ~ 23714371 (+) True G186814
TU221099 lncRNA upstream 258067 23671984 ~ 23676568 (+) False G186798
TU221284 lncRNA downstream 218409 24153115 ~ 24203702 (+) True G186949
TU221288 lncRNA downstream 221074 24155780 ~ 24162236 (+) True G186951
TU221282 lncRNA downstream 221896 24156602 ~ 24203702 (+) False G186949
TU221283 lncRNA downstream 222416 24157122 ~ 24203702 (+) False G186949
TU221319 lncRNA downstream 226562 24161268 ~ 24186454 (+) True G186976
XM_034308759.1 mRNA upstream 8491 23835703 ~ 23926144 (+) True dennd1b
XM_026912969.2 mRNA upstream 461066 23413029 ~ 23473569 (+) False LOC113526144
XM_026917310.2 mRNA downstream 44167 23978873 ~ 24003792 (+) True aspm
XM_026917314.2 mRNA downstream 44167 23978873 ~ 24003792 (+) False aspm
XM_026913018.2 mRNA downstream 183112 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA downstream 183112 24117818 ~ 24138641 (+) False b3galt2
XM_026912944.2 mRNA downstream 183112 24117818 ~ 24138641 (+) False b3galt2
trnaq-cug_11 other upstream 432 23934132 ~ 23934203 (+) True trnaq-cug_11
trnaq-uug_2 other upstream 1698 23932866 ~ 23932937 (+) True trnaq-uug_2
trnap-agg_1 other upstream 1975676 21958888 ~ 21958959 (+) True trnap-agg_1
XR_004579103.1 other upstream 2724096 21189786 ~ 21210539 (+) False wipf2a
TU218923 other upstream 3783741 20149971 ~ 20150894 (+) True G184979
trnaq-uug_4 other downstream 2311 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-cug_12 other downstream 3603 23938309 ~ 23938380 (+) True trnaq-cug_12
trnaq-uug_5 other downstream 4111 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-uug_6 other downstream 12286 23946992 ~ 23947063 (+) True trnaq-uug_6
TU221326 other downstream 273187 24207893 ~ 24210725 (+) True glrx2