RNA id: TU223264


Basic Information

Item Value
RNA id TU223264
length 391
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G188605
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 509030 ~ 511976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatacacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagttataatcgCGTTATACacgtggatacagaagttataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataatcgcgttatatacgtggatacagaagtcataATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004579155.1 lncRNA upstream 254282 243923 ~ 254748 (+) True LOC113535322
XR_003403586.2 lncRNA upstream 254282 243923 ~ 254748 (+) False LOC113535322
TU223110 lncRNA upstream 326155 157512 ~ 182875 (+) True G188466
XR_004579296.1 lncRNA upstream 500515 8047 ~ 8515 (+) True LOC113537089
TU223343 lncRNA downstream 123351 634400 ~ 634983 (+) True G188681
TU223359 lncRNA downstream 181910 692959 ~ 694469 (+) True G188694
TU223194 lncRNA downstream 213984 725033 ~ 779548 (+) False plekha1b
TU223383 lncRNA downstream 229377 740426 ~ 741752 (+) True G188715
TU223403 lncRNA downstream 323054 834103 ~ 834569 (+) True G188730
XM_034309343.1 mRNA upstream 233584 274381 ~ 275446 (+) True LOC117598554
XM_026928107.2 mRNA upstream 288473 137521 ~ 220557 (+) False ccser2b
XM_026928112.2 mRNA downstream 210002 721051 ~ 753040 (+) True btbd16
XM_034309248.1 mRNA downstream 210002 721051 ~ 753040 (+) False btbd16
XM_026928113.2 mRNA downstream 210002 721051 ~ 753040 (+) False btbd16
XM_034309259.1 mRNA downstream 251155 762204 ~ 784991 (+) True plekha1b
XM_034309260.1 mRNA downstream 251155 762204 ~ 784991 (+) False plekha1b
XR_003403557.2 other upstream 288662 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 1152043 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 2249644 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 2459076 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 2459076 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2727395 3238444 ~ 3239216 (+) True G190028

Expression Profile