RNA id: TU223426


Basic Information

Item Value
RNA id TU223426
length 201
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G188747
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 922605 ~ 922805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgtctctTAATGCTTCAGATAGAATGCGTTCGCTGAGCAATAACGAGTCTTGtcggtctcacacacacacacacacacacacacacgctcagcaGGAGGACATGCTGGGGATATTTCCTGCCAAGAGCATGAATTTCCTGCTGAATAATTGAAAATGGCTCGAGTGTAAACAGCGAGAGAGGGATCAGACAGAAGCGAGAC

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223423 lncRNA upstream 9232 905466 ~ 913373 (+) True G188744
TU223403 lncRNA upstream 88036 834103 ~ 834569 (+) True G188730
TU223194 lncRNA upstream 143057 725033 ~ 779548 (+) False plekha1b
TU223383 lncRNA upstream 180853 740426 ~ 741752 (+) True G188715
TU223359 lncRNA upstream 228136 692959 ~ 694469 (+) True G188694
TU223428 lncRNA downstream 1480 924285 ~ 924490 (+) True G188749
TU223449 lncRNA downstream 49950 972755 ~ 973859 (+) False LOC113535146
TU223448 lncRNA downstream 51992 974797 ~ 975865 (+) True G188761
TU223461 lncRNA downstream 123695 1046500 ~ 1050620 (+) True G188770
TU223911 lncRNA downstream 622993 1545798 ~ 1546582 (+) True G189170
XM_034309346.1 mRNA upstream 2073 889176 ~ 920532 (+) True LOC113535268
XM_026928143.2 mRNA upstream 54796 858068 ~ 867809 (+) False get4
XM_026928142.2 mRNA upstream 54796 858072 ~ 867809 (+) True get4
XM_034309230.1 mRNA upstream 66522 836051 ~ 856083 (+) True zgc:174164
XM_026927819.2 mRNA upstream 66522 836052 ~ 856083 (+) False zgc:174164
XM_026928328.2 mRNA downstream 34727 957532 ~ 974218 (+) False LOC113535146
XM_026928326.2 mRNA downstream 37660 960465 ~ 974218 (+) True LOC113535146
XM_026928329.2 mRNA downstream 41836 964641 ~ 974218 (+) False LOC113535146
XM_026928330.2 mRNA downstream 41884 964689 ~ 974218 (+) False LOC113535146
XM_034309264.1 mRNA downstream 41886 964691 ~ 974218 (+) False LOC113535146
XR_003403557.2 other upstream 702237 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 740287 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1837888 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 2047320 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 2047320 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2315639 3238444 ~ 3239216 (+) True G190028

Expression Profile