RNA id: XM_034309264.1


Basic Information

Item Value
RNA id XM_034309264.1
length 3087
RNA type mRNA
GC content 0.46
exon number 3
gene id LOC113535146
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 957532 ~ 974218 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCCGGAGCTCGCGCGACCTTCAGCCGGTACTGTTACTGCTGCTCATTTATCGCTGCCGTTATTCTGCTGTTTCCGCTACTTCTTTACAGAGAGAAGTCAGCAGAGGAAAACCAGCAACATGGCCGCCCGCTTCCTGTTTCTCTTCGACTTCGACGAGACGCTGATCGCAGAGAACAGCGATAACTCGGTGGTCCGTGCCGCGCCATTGCAGAAGCTCCCCGAGTCCCTGAGGGAAAGTTCCCGCCCCGGATTCTTCTTGAACTACACGCAGCACATCATGACATTCCTGAACGAGTGCGGCGTCACCGAGGACGCCATCCGGGCCGCGATCGAGGAAATCCCGCCCTCTCCGGGTGGAGCTGCGCTTCTCGACTTCCTGTTGGCTCAGGACGACTTTGAGTGTGTCGTGGTCTCGGATGCTAACTCGTACTTTATCGAGACTTGGTTACGGCACGTCGGCGCTCACAAACTTTTCACCAAGGTTTTCACCAACCCAGCGGAATTCGACACCAACGGACGCCTCACCTTGCGCCCTTTCCACTCCCACTCCTGCCCTAGGTGCCCGGAAAACATGTGCAAGCAGTTCATCCTGAGAGACTACATGAGCAAAAGAATGAAGGAGCGAGGGGAACCTTTCCAAAAGGTGTTCTACATAGGCGACGGAGAAAACGACATCTGTCCCACGTTAGCGTTGGGGCAAAACGATACGGTTTTCCCTAGGAGAGGTTTCCCGATGCACAACATCATTCAGGATCTGCACAAGACGCAGCCGGGGGCGTATAAACCCTCGGTCATGCCCTGGGAGCGAGGCGAAGACGTGGTGGACTTCCTGAAGAAGGTCTTGCAGGAGAAATAAACGGCTAGAGCAGAAGAGGACAAAGAGTGCAtgagttaaaaacaaaaaaaggaggaagaagggagattaaattacacacagatacctaatacacacacaaaccagcaCCTGAGACATGATTAGCCTTGCATGAGCCTCGCTAACGCACCGCACCAGAATAAAAAAGGTCACGGTGCGGAAAGAGGACGAGCGTCTCGAGGCTGAACGACACACATGAGACCGAGCGTCTCGCAATGCTGTACAAGATCTCTCAGAGAAACGGCTTCCGGCTAAAGGCTAATGCAAGGCTAACCTTTGTTAATGTCTTCCTGAactctatctcacacacacacacacacacacaggctagtATCGCTAATAAACACATGAATGCTAGGTGCACACAGTtgctaacatacacacacacacagaggctagTCCCTCTgtagctaaactcacacacacacacacacaggctagtATCGCTAATAAACACATGAATGCTAGGTGCACACAGTtgctaacatacacacacacagaggctagTCCCTCTGTAGCTAAACTCACACATACtgctcatacacactcatactgCTAATACACACATGAATGCTAATCTATTTGACACAGAAGCATACACTAATATTCATACGGAGGctagatccacacacacacacacacacacacacacacacagaggctagTATTACTAATACACACATGAAtgctaatatacacacacactcacatacacagaGGCTAGTCCCTCTGTAGGCAATCACAAgctaatttcacacacacacacacacacacacacattagtctCAGTGTTTAGGCTAGTCTACTATCTTGTGTATGCTAGTTATCAGCATGTGTTGTGCTGCGTTCCAGTGCACTGAGAACTTTGAAAAAACTAGAGACGCTGAAAATTGCGGCGGAATAAACGCGTGACGTAAACACTCATCGCAGACAAAATGGCGGCGCACAGAGGAAACACCGAGCATTACCGCACTGCATAGATTTCGCTTTTATACACCGTGTTACAGGcgtgttacaggtgtgttacAGACGTGTTACAGACGTGTTCTCTGTATGTTTTCGGTTTGTAGTCATTGCATTCGCTCATTTTTGCTGAATAATGTTAGATAGAATACTTTTTTCCCAATGCGCTAGCCTACTAGCTAGGTTGCTAGCTTCATTAGAAACCATTAAATcggttcaattcagttttatctgTACCGTATTTTTAGCAATAGATATCGTCAccaagcagctttagagaaaatCAAACGCTACATTCATGCTAGCAAGCAAGGAAACGACAGATGGGCATTAATTTTCTACTCAGCTGCGATTTCAGCCACAGCGACAACATGAAGAGCGACGTTTCTTAGGTAACTACAGCATGTGTGGTgcgatgtttcttcagttccccgctcacaactttagttcctacctgcagttataGTTCTCATTTACGCAGAAAAACGGAAGATAAGCGTGATTTCATCTTCTCCCGTCGTATACGATCTCTCATTCTCGATAAACAGGTACGGAGacgttaggaagaaaaataaagttcagAAGGAAGTAGCAGATCGTCGgtgtctctggtgagtgtacgtagctagtatAGCTAGTATAGTactcgctttgctaatctaatctgagaacgaTGCTAGTACGAAGCCGAGCGCGTAACACGTAAATCACGCAACCTTTCTAACAATTTTCTCactgattagtgcgttatttaatttgtgtttaattagttagctttagaagcaaGATACAGTATACTATATGATAGTTTCtcatcagaatttaaaaaaaataaaataaaataaaaaaaaactgagtaggccacgcccacaagcacAAACTAACTACAGGTGACTTAACACTTGCTAGCGTGACCGTATGACTGTAGGTTTAGATCCAGAAACAGTTTAATGGGTTCTAGTCGGTTTCTGGCGGTGTGTAATGGCAGTTTAATGGAGTGTCCTGCTCCTAATGGTCCCTGATGGTTTATCTAATGAAAGAAGGTCCTCCTGGAGTGAAGTGGTTTTTAATAGTAATCAATAAACTTCCTAATGGAAACCTAAAGGAATCTGATGGAACCATCAGGGACCATTAGGAACCTTTAAGGTCCATTAAGTGAAACCatttttcaggaataaaacactcggtgtcgtgcggttataggaaaataatcagtgtctTGTTTCCGCatctagttgttttttttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223428 lncRNA upstream 40201 924285 ~ 924490 (+) True G188749
TU223426 lncRNA upstream 41886 922605 ~ 922805 (+) True G188747
TU223423 lncRNA upstream 51318 905466 ~ 913373 (+) True G188744
TU223403 lncRNA upstream 130122 834103 ~ 834569 (+) True G188730
TU223383 lncRNA upstream 222939 740426 ~ 741752 (+) True G188715
TU223448 lncRNA downstream 579 974797 ~ 975865 (+) True G188761
TU223461 lncRNA downstream 72282 1046500 ~ 1050620 (+) True G188770
TU223911 lncRNA downstream 571580 1545798 ~ 1546582 (+) True G189170
TU223926 lncRNA downstream 593298 1567516 ~ 1665337 (+) False LOC117598477
TU223946 lncRNA downstream 635608 1609826 ~ 1612220 (+) True G189190
XM_034309346.1 mRNA upstream 44159 889176 ~ 920532 (+) True LOC113535268
XM_026928143.2 mRNA upstream 96882 858068 ~ 867809 (+) False get4
XM_026928142.2 mRNA upstream 96882 858072 ~ 867809 (+) True get4
XM_034309230.1 mRNA upstream 108608 836051 ~ 856083 (+) True zgc:174164
XM_034309257.1 mRNA downstream 2305 976523 ~ 996803 (+) False LOC113535123
XM_026928297.2 mRNA downstream 6797 981015 ~ 996803 (+) False LOC113535123
XM_034309256.1 mRNA downstream 7498 981716 ~ 996803 (+) False LOC113535123
XM_034309255.1 mRNA downstream 8850 983068 ~ 996803 (+) True LOC113535123
XM_034309232.1 mRNA downstream 24569 998787 ~ 1009835 (+) False dbf4b
XR_003403557.2 other upstream 744323 137521 ~ 220368 (+) False ccser2b
TU223925 other downstream 688874 1663092 ~ 1665337 (+) False LOC117598477
TU224759 other downstream 1786475 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1995907 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1995907 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 2264226 3238444 ~ 3239216 (+) True G190028

Expression Profile