RNA id: TU223615


Basic Information

Item Value
RNA id TU223615
length 337
lncRNA type intronic
GC content 0.37
exon number 3
gene id G188908
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 506908 ~ 508671 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

Aattataacttctgtatccacgtgtataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtatataacgcgattatgacttctgtatccacgtgtataacgcgattatgacttctgtatccacgtatataacgcgattataacttctgtatccacgtgtataacgcgattataacttctgtatccacgtatataacgcgattataacttctgtatccacgtatataacgcgattataacttctgtatcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403575.2 lncRNA downstream 367174 135208 ~ 139734 (-) True LOC113535197
TU223616 lncRNA upstream 360 509031 ~ 509294 (-) False G188909
TU223617 lncRNA upstream 360 509031 ~ 511009 (-) True G188909
TU223629 lncRNA upstream 24836 533507 ~ 534276 (-) True G188918
TU223636 lncRNA upstream 36953 545624 ~ 773583 (-) True G188923
TU223672 lncRNA upstream 127844 636515 ~ 636889 (-) False LOC117598518
XM_034309344.1 mRNA upstream 124332 633003 ~ 636382 (-) True LOC117598555
XM_034309263.1 mRNA upstream 127826 636497 ~ 638042 (-) True LOC117598518
XM_034309226.1 mRNA upstream 184277 692948 ~ 718933 (-) True waplb
XM_034309261.1 mRNA upstream 319526 828197 ~ 834760 (-) True c12h10orf88
XM_034309345.1 mRNA upstream 359366 868037 ~ 879127 (-) True vps35l
TU223922 other upstream 1056219 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 1059615 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1686316 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 2284375 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 2291405 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile