RNA id: TU223629


Basic Information

Item Value
RNA id TU223629
length 616
lncRNA type intronic
GC content 0.47
exon number 2
gene id G188918
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 533507 ~ 534276 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagacaCGTGACAcattaaatgaagaaaagacATAAAAGTGTGTTTGTAAGGTGTTAGGAGACGGAGAACCTTCTAAAAGATGGAGAACCTTCTAAAAGAtcttccctcagttggtgttgtgtgttgtgtgtgagatgttgttGCAGTGACAGAGGTAGAGAATTGAGTCTCagttgtgttgagtgtgtgtgtgtgtgtgtgtgagtgttgagtgagtgtgtttgagtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgttgagtgagtgtgagtgtgtgtgtgtgtgtgtgtgagtgttgagtgagtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgagtgtgtgagagtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223617 lncRNA downstream 22498 509031 ~ 511009 (-) True G188909
TU223616 lncRNA downstream 24213 509031 ~ 509294 (-) False G188909
TU223615 lncRNA downstream 24836 506908 ~ 508671 (-) True G188908
XR_003403575.2 lncRNA downstream 393773 135208 ~ 139734 (-) True LOC113535197
TU223636 lncRNA upstream 11348 545624 ~ 773583 (-) True G188923
TU223672 lncRNA upstream 102239 636515 ~ 636889 (-) False LOC117598518
TU223648 lncRNA upstream 157323 691599 ~ 784981 (-) True G188929
TU223693 lncRNA upstream 214462 748738 ~ 834576 (-) False c12h10orf88
TU223634 lncRNA upstream 236177 770453 ~ 772015 (-) True G188922
XM_034309344.1 mRNA upstream 98727 633003 ~ 636382 (-) True LOC117598555
XM_034309263.1 mRNA upstream 102221 636497 ~ 638042 (-) True LOC117598518
XM_034309226.1 mRNA upstream 158672 692948 ~ 718933 (-) True waplb
XM_034309261.1 mRNA upstream 293921 828197 ~ 834760 (-) True c12h10orf88
XM_034309345.1 mRNA upstream 333761 868037 ~ 879127 (-) True vps35l
TU223922 other upstream 1030614 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 1034010 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1660711 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 2258770 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 2265800 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile