RNA id: TU223636


Basic Information

Item Value
RNA id TU223636
length 1361
lncRNA type read_through
GC content 0.49
exon number 2
gene id G188923
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 545624 ~ 773583 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TgcgtggtggtgatgatgggaACTCCTCCGATGATCTCGGTCTTGTAGGAGACCTGCTTCATGGCACCCAGGACCTCCACGCAAGCCTCCGCTGGGTTCTGCCCGCTCTGATCGCCTGACTTCGGCACCTGCAAACAACGTTACAAgcttacaccgatcagccataacattaaaaccacctgcctaatatcgTGTAGATCCTCCTTGCGCcagtaaaacagctctgacgCGTTGAggcctggactccacaagacctctgaaggtgtgtgtggtttctgtggtataagacctttagcagcagatcctttaagtcctgtaagttgtgaggtgaggcctccatggatcggacttgtttgtccagcacgtcccacagtcGCTCGAtaggattgagatctggggaatttggaggccaagtcaacagtttgaactctttgtcatgttcctcaaaccgttcctgaaGAATTTTTGTGGCAGTGTagcagggagcatcatcctgctgaaagaggccactgccattagggaacaccgttaccatgaaggggtgtaactccatctgcagcaatgtttaggtaggtggtacgtgtcaaagtaacatccacatgaaggccaggacccgaggtttcccagcagaacattgcccagaccatcacactgcctccgccagctcgcctttttcccatagtgcatcctggtgccatctcttccccaggtaagcgacacacacacacacccggctctctgaccgctctgcagctacgcagctccatacgcagtaatctgcactgcactgtgttctgactcctttctaacAGAGCCAGCTttcacttttcagcagtttgtgctacagaagCTCTGCTGTGGGATCGGAGCAGACGGGCCTTCGCTCTCctcgcgcatcagtgagccttgggtgctcCTGATACCGGGTTGTGGACTGGTTGTCTTGGTAACTAGTACAGCTTCGAAGAATTGTATATTATGTTTACAAAAGTATGTCTAAAAAAATAGCaagtgcataataataataatgataacaggatcgtatattatgtatattacgAGGCGTTCTTGTTTAAGTATAAATCCCGTTGATGTTTAAGAAGGCTTTAGTGTAACTGAGTGATTCGTGTCATGTGATGTGTGAAGCAGAGCTGTGAAGTTGCACGTGCACTGAGGAGACGGCAGATTTTTTCTGTTAGCATAATCGCTGGAGATTGTAAAGCCTTGAGTGCTCATTGTCGATAGCAAGCTGCTTTAATTAGGCAAACTAATCGGACGCCTGTTGTGCAGAGTAGCAGGAGTTCACATGCTTCCGCTGAGGCTAAGTCCCTTTAGTCAGGAGAAAATACGAAATggccgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223629 lncRNA downstream 11348 533507 ~ 534276 (-) True G188918
TU223617 lncRNA downstream 34615 509031 ~ 511009 (-) True G188909
TU223616 lncRNA downstream 36330 509031 ~ 509294 (-) False G188909
TU223615 lncRNA downstream 36953 506908 ~ 508671 (-) True G188908
XR_003403575.2 lncRNA downstream 405890 135208 ~ 139734 (-) True LOC113535197
TU223735 lncRNA upstream 58237 831820 ~ 832815 (-) True G189010
TU223765 lncRNA upstream 106162 879745 ~ 880237 (-) True G189035
TU223780 lncRNA upstream 152241 925824 ~ 926056 (-) True G189050
TU223808 lncRNA upstream 240334 1013917 ~ 1028653 (-) True G189077
TU223821 lncRNA upstream 267158 1040741 ~ 1041113 (-) True G189090
XM_034309229.1 mRNA downstream 9287 339066 ~ 536337 (-) False grid1b
XM_034309261.1 mRNA upstream 54614 828197 ~ 834760 (-) True c12h10orf88
XM_034309345.1 mRNA upstream 94454 868037 ~ 879127 (-) True vps35l
XM_034309250.1 mRNA upstream 109111 882694 ~ 888949 (-) False becn1
XM_034309252.1 mRNA upstream 109111 882694 ~ 888948 (-) False becn1
XM_034309249.1 mRNA upstream 109111 882694 ~ 888948 (-) False becn1
TU223922 other upstream 791307 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 794703 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1421404 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 2019463 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 2026493 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile