RNA id: TU223765


Basic Information

Item Value
RNA id TU223765
length 493
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G189035
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 879745 ~ 880237 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

actgactttgtttcatttatttctgtttactgctctttataggattttttaatgcagaaacatttaatttcattatttctgaaagcatttctttgcatgtgcctaagacttttgcacagaactgtatatatcgAGAAAAGAGCattgggcctaaaacagaaccttgagCAACACCAAACATTAGTATGTACAGAAGGaaacatttacatctacaagAACGTTATGATCTTGGGTGTCAAAAGCTGCACGGAGATCGAGCAACACAAGGAGAGACAGTACTCTGATCAGAGGCGAGAATtcggtcatttaccactttaaccagcgctgtctctgtgctgtgatgaggcctaaaccCTGACTGACAGATCAAACatgtttagtttttagtttttagctACCACTTGTAGATTATTTTACTAATCAAGAGctgtattattaatgttattatttattacccATGTACTAACACTAACTTTTGTTGTTTATCTTCAAT

Function

GO:

id name namespace
GO:0022624 proteasome accessory complex cellular_component
GO:0008537 proteasome activator complex cellular_component
GO:0046980 tapasin binding molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223693 lncRNA downstream 45169 748738 ~ 834576 (-) False c12h10orf88
TU223735 lncRNA downstream 46930 831820 ~ 832815 (-) True G189010
TU223648 lncRNA downstream 94764 691599 ~ 784981 (-) True G188929
TU223636 lncRNA downstream 106162 545624 ~ 773583 (-) True G188923
TU223634 lncRNA downstream 107730 770453 ~ 772015 (-) True G188922
TU223780 lncRNA upstream 45587 925824 ~ 926056 (-) True G189050
TU223808 lncRNA upstream 133680 1013917 ~ 1028653 (-) True G189077
TU223821 lncRNA upstream 160504 1040741 ~ 1041113 (-) True G189090
TU223786 lncRNA upstream 165872 1046109 ~ 1047784 (-) True G189056
TU223797 lncRNA upstream 184933 1065170 ~ 1071217 (-) True G189067
XM_034309345.1 mRNA downstream 618 868037 ~ 879127 (-) True vps35l
XM_034309261.1 mRNA downstream 44985 828197 ~ 834760 (-) True c12h10orf88
XM_034309226.1 mRNA downstream 160812 692948 ~ 718933 (-) True waplb
XM_034309263.1 mRNA downstream 241703 636497 ~ 638042 (-) True LOC117598518
XM_034309344.1 mRNA downstream 243363 633003 ~ 636382 (-) True LOC117598555
XM_034309250.1 mRNA upstream 2457 882694 ~ 888949 (-) False becn1
XM_034309252.1 mRNA upstream 2457 882694 ~ 888948 (-) False becn1
XM_034309249.1 mRNA upstream 2457 882694 ~ 888948 (-) False becn1
XM_034309251.1 mRNA upstream 2457 882694 ~ 888918 (-) True becn1
XM_034309268.1 mRNA upstream 45951 926188 ~ 943327 (-) True LOC113535267
TU223922 other upstream 684653 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 688049 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1314750 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 1912809 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 1919839 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile