RNA id: TU223786


Basic Information

Item Value
RNA id TU223786
length 1625
lncRNA type inter_gene
GC content 0.31
exon number 2
gene id G189056
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1046109 ~ 1047784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAGAAATTTGTCCTTtaactgtttcatttttttatgtaatttatggtgattttttttgaattattcatttatttttaaacaagcgTACAGTATTGTAACGGAGTCTTTTGATGTTCTTGGTggtaatttactgtaaataaatcctttatttttattcctgaatgcTGTTTGACTGTAAGTGAGAGTTTTTTGTAAAGTTACGCTATAAAAACAGTATAATCAGGTCACGTTCTGATCGAGATCACACTCCGTGCCGTCAGTAACGCTAAATGTGTGCTTAATCATAttccattaaataataatgataagaagaagaagaagaagaagactatatgtgtaatatgtgcTATATGGATGATACAGTAAGAATTAATAATGTACATTGTGATTATGAGGAgaaatgtacagtgtgtagttgCATTTGCGCTCAGGCTGGTGTACAGTCCTGTAAATACACAATATTCCATAATCTCTCTATATAGAatagtatatatgtgtgtatatatttctatatgtgCATAAACAGCAGTGTAGAGATAAAGCTCGAGTATCGGCTGAACGCTACTGAAGATCCGCTGGCGGTGTTTCCACTAAACTCAAACCCAGTTCATCATCACAGTGTGCTCAAAGTGCACTCAGGCTCATTTCTGGGCGTGTTTTAATTCCTAAATCATCTTTACTGCTAAATTCAAATCACATGACCAGGGTTTCTACTAGTTCCTCTGTCATTTCAAAGGGtttcattataataatattaaaactgatTGTATCCCTGATTTACATTAATCTTCACCTATTAAGATTAATATATTAAAGACTAGGAGTTTACATCCTGCACGTACGCCAGTCGGTTTTGCTTTTCTGCCTTTTCAGCAAATTTAGTGAAAAATCACGTgataaataatatcattttatacattaatCTTTAACTGTATGGCTGTAATTTGTCTCTTAAAGGCCTCCAGTGCATCGATCCAGCCTTCtgaattcaaaaaaaaaaaaataaagtcttttAAAATACTGAACTTTTCCATCTGACGACCTGCAAAAGTCACGATTTAATAAATCACAGCTGGATTTAAAGGTGCTCTGAATATTACAACAGATTTCATCcctgaatattttttattttcacgttAATCTTTTTGGCTTTTATGGCTCAGATTCGTACTAATTTAGTGACGTTATTAATAAAGGAATGGACCAGTTCATTTTGCTTTTGGGTGAAAATTAGCttcttgaggaaaaaaaaaaaaaaatgaagcaagaTTTAACAATCcagttagcttaaatatactgtatatgaatatatCATTTCAATTCAACTGGCGCTTCAGTCTGTTTTCAGAAAGAAGCAGAATTTAAAGAAATTCTAATGAATAAAGTATAAacaaatattagaatattaatgAATTTCAGCAGGAAAAATCTGAAACGAAAATAAAAAGTTCAGTCAGAAATCTGATTCTCAGTTTGCTGATGATGTATTGCTGcgtgtttgtttggtttgttttttttaaaaaaaaaagctgattccCATTGCTAGAAACAGATTTATTAACTAAACAGCGAAcacttttaaaacttaaaatgactactgattattattattattattattatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223821 lncRNA downstream 4996 1040741 ~ 1041113 (-) True G189090
TU223808 lncRNA downstream 17456 1013917 ~ 1028653 (-) True G189077
TU223780 lncRNA downstream 120053 925824 ~ 926056 (-) True G189050
TU223765 lncRNA downstream 165872 879745 ~ 880237 (-) True G189035
TU223735 lncRNA downstream 213294 831820 ~ 832815 (-) True G189010
TU223797 lncRNA upstream 17386 1065170 ~ 1071217 (-) True G189067
TU223878 lncRNA upstream 257382 1305166 ~ 1370050 (-) True G189145
TU223882 lncRNA upstream 342579 1390363 ~ 1391921 (-) True G189149
TU223885 lncRNA upstream 342889 1390673 ~ 1391921 (-) False G189149
TU223899 lncRNA upstream 406120 1453904 ~ 1533954 (-) True G189161
XM_034309225.1 mRNA downstream 90268 944848 ~ 955841 (-) True LOC113535162
XM_034309268.1 mRNA downstream 102782 926188 ~ 943327 (-) True LOC113535267
XM_034309267.1 mRNA downstream 103024 926192 ~ 943085 (-) False LOC113535267
XM_034309249.1 mRNA downstream 157161 882694 ~ 888948 (-) False becn1
XM_026928249.2 mRNA upstream 18140 1065924 ~ 1073226 (-) True LOC113535098
XM_034309506.1 mRNA upstream 566212 1613996 ~ 1619414 (-) True LOC113535205
XM_034309198.1 mRNA upstream 574896 1622680 ~ 1650547 (-) True LOC117598490
XM_026927851.2 mRNA upstream 713050 1760834 ~ 1773520 (-) True LOC113534879
XM_026927853.2 mRNA upstream 713050 1760834 ~ 1773517 (-) False LOC113534879
TU223922 other upstream 517106 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 520502 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1147203 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 1745262 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 1752292 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile