RNA id: TU223808


Basic Information

Item Value
RNA id TU223808
length 371
lncRNA type inter_gene
GC content 0.58
exon number 2
gene id G189077
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1013917 ~ 1028653 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tctcacacacacacacacacacacacacacacgccccggTTCGGTCGGTTCTTACCTGTAACGGAGACCGCAGCCCACAGGAGGAGGCACCGCGCCGCCCGCATGGCGTTCACATACTGCGCGCGGGCATGAAAACAAGGACAAATCCGGTAGAacggaaaaaaataaaacaaaacaaaataaagagatGACACTCAGCACCGAGACGTGCAGCGCGCGACGCTTTATTAAGCCATTGTAACTGATGCGCGAGCgagaggagggaaaaaatcCCGCACCGGAGCCGCACACGGTACCGAGCTCACGGCGCGCGCTGGCTCTGCAGTGAAAAACCGCCCGCACgcgctcgctcgctcgctcactcactcacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223780 lncRNA downstream 87861 925824 ~ 926056 (-) True G189050
TU223765 lncRNA downstream 133680 879745 ~ 880237 (-) True G189035
TU223693 lncRNA downstream 179341 748738 ~ 834576 (-) False c12h10orf88
TU223735 lncRNA downstream 181102 831820 ~ 832815 (-) True G189010
TU223648 lncRNA downstream 228936 691599 ~ 784981 (-) True G188929
TU223821 lncRNA upstream 12088 1040741 ~ 1041113 (-) True G189090
TU223786 lncRNA upstream 17456 1046109 ~ 1047784 (-) True G189056
TU223797 lncRNA upstream 36517 1065170 ~ 1071217 (-) True G189067
TU223878 lncRNA upstream 276513 1305166 ~ 1370050 (-) True G189145
TU223882 lncRNA upstream 361710 1390363 ~ 1391921 (-) True G189149
XM_034309225.1 mRNA downstream 58076 944848 ~ 955841 (-) True LOC113535162
XM_034309268.1 mRNA downstream 70590 926188 ~ 943327 (-) True LOC113535267
XM_034309267.1 mRNA downstream 70832 926192 ~ 943085 (-) False LOC113535267
XM_034309250.1 mRNA downstream 124968 882694 ~ 888949 (-) False becn1
XM_034309252.1 mRNA downstream 124969 882694 ~ 888948 (-) False becn1
XM_026928249.2 mRNA upstream 37271 1065924 ~ 1073226 (-) True LOC113535098
XM_034309506.1 mRNA upstream 585343 1613996 ~ 1619414 (-) True LOC113535205
XM_034309198.1 mRNA upstream 594027 1622680 ~ 1650547 (-) True LOC117598490
XM_026927851.2 mRNA upstream 732181 1760834 ~ 1773520 (-) True LOC113534879
XM_026927853.2 mRNA upstream 732181 1760834 ~ 1773517 (-) False LOC113534879
TU223922 other upstream 536237 1564890 ~ 1565260 (-) True G189180
TU223956 other upstream 539633 1568286 ~ 1571073 (-) True G189199
XR_003404831.2 other upstream 1166334 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 1764393 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 1771423 2800076 ~ 2805906 (-) False LOC113547504

Expression Profile