RNA id: XR_004579144.1


Basic Information

Item Value
RNA id XR_004579144.1
length 1192
lncRNA type inter_gene
GC content 0.32
exon number 3
gene id LOC117598477
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1567516 ~ 1665813 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTCTTCCCACCTCCGGAGGATGGTCCAACATCAGTGAAACAGAGAAATGTCAGCACAGACCATACACACAGCGGGATAAAgAATATACCATCACCTGACCAGCTGGAAGACGCTGTGAAATGGAAATTCCTTCCTGATATATGTAGCAGTCAAAAAAATATAGAACCCATTATGATCAATGAGAGttcaattttacaatttattctgaatattataattaaaaaaaaattgcattaagtAACACTGAAAAATATGCAGCTCTCCAATGAAAAAAGTAGTTTATGTCCCTGAGTTTtttaacaatgtttaaaaaatctaaagtcAAAGACttagtgacagaaaaaaatagacaatATGCATTCGCGTTTATGAAAAGGATAGATAATTCCTGTTTTAAAGAAATCGGTCCATTTTACCCAGTCAAATACCACAGTGaggattttatttgtaaagaaattaaaaacatgatacaAACAAAGGAAATTGATAATTTTTCTGAAATTTGGATTTACACAGTGAATAGTCCATGTATAGGGAGAAAAAATCATATTCCTTGTATGTATAATTTAATCTCTTTATCATTCACCTTAGGTCAGAACTATGGGATTAAAATGTACATCGGCTTCACtaaattttatgtattttgcacaaacatgagtaacatttttaataacagtaaaGAATTGGATGTTAATAGTAAGAAAATCATTGAAGCATCTGATTTGAATCAATTAAAGTTTTCTGTtcaatttaatatttcagaatttaaacatgaatttaaaaGTTTATGATGAATATTCCCAAAAATAAACGTAAAGGTAGTTTATGGCAATAGAATGTTTCCTCAATCTCTAGACTTAGCACTGATTTATGAAGAGTGGAAGCAGGAAGGAATACAAACAGCAGAACAACTCGCCTCAGAAATGAGTGTGAAAATCGGGAAGCGCTTAGTGAAATGATGCCGCATTTTGATAAGCTTAAGCCTGTGATTATTAATTGGTgggataaaaatgtaaacagatccatgttattaaatgaaagattcagtgattttattgaaaaaatgtGGTTCTACACTACTTGGACGACATCCAGCACCGCGGAACATCATCCTGAACTTTTCCAGATTGACTGCTACTGTTTGGCTAATGAGGAATAATTTGGATTATAATAAATTTGGCTGATTGGGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223946 lncRNA upstream 50877 1609826 ~ 1612220 (+) True G189190
TU223911 lncRNA upstream 116515 1545798 ~ 1546582 (+) True G189170
TU223461 lncRNA upstream 612477 1046500 ~ 1050620 (+) True G188770
TU223448 lncRNA upstream 687232 974797 ~ 975865 (+) True G188761
TU223449 lncRNA upstream 689238 972755 ~ 973859 (+) False LOC113535146
TU224019 lncRNA downstream 109792 1775605 ~ 1776432 (+) True G189245
TU224061 lncRNA downstream 197389 1863202 ~ 1863652 (+) True G189280
TU224082 lncRNA downstream 221837 1887650 ~ 1887870 (+) True G189293
XR_004579220.1 lncRNA downstream 258171 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA downstream 258210 1924023 ~ 1925679 (+) False LOC117598584
XM_026927863.2 mRNA upstream 54200 1600541 ~ 1608897 (+) True klhl11
XM_034309349.1 mRNA upstream 60832 1579297 ~ 1602265 (+) True aclyb
XM_034309527.1 mRNA upstream 97334 1564045 ~ 1565763 (+) True LOC117598650
XM_026928539.2 mRNA upstream 170886 1488171 ~ 1492211 (+) True LOC113535294
XM_034309244.1 mRNA upstream 211267 1404303 ~ 1451830 (+) False LOC113535212
XM_034309396.1 mRNA downstream 44136 1709949 ~ 1714497 (+) True LOC117598580
XM_026928117.2 mRNA downstream 172950 1838763 ~ 1844749 (+) True LOC113535035
XM_034309399.1 mRNA downstream 180415 1846228 ~ 1851194 (+) True LOC113535036
XM_026928118.2 mRNA downstream 181808 1847621 ~ 1851194 (+) False LOC113535036
XM_034309398.1 mRNA downstream 209841 1875654 ~ 1882978 (+) False foxh1
XR_003403557.2 other upstream 1442729 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 1094880 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 1304312 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 1304312 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 1572631 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1735454 3401267 ~ 3405009 (+) True G190212

Expression Profile