RNA id: TU223962


Basic Information

Item Value
RNA id TU223962
length 357
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G189200
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1570108 ~ 1602249 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GACTTTATTATATTCTACAATATTACAGTTTTtagcatatattttttaaaaaaaggaaagaaaacagaagataGCAAAAAAGCTGCTtgatttcacatttaaatacagaaacataaaaacaggGTTGTAGCGGAGAATCCCAGTCTCGCCCAAACACCAGAATAAACAgttagtgatgtgtgtgtgtgtgtgtgtgtgtgtgattagagaaGGAGGGCAGGTCATGCAGCAGGCTGGTGAAGGAGATACAACCGTTACTGAGGCGAAGAGGGAAGCTGTAACATCAACACATTACTGAAACACTcaaactcacacacacacacacacacacacacacacacacacacacacacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU223915 lncRNA downstream 21386 1547696 ~ 1548722 (-) True G189174
TU223899 lncRNA downstream 36154 1453904 ~ 1533954 (-) True G189161
TU223882 lncRNA downstream 178187 1390363 ~ 1391921 (-) True G189149
TU223885 lncRNA downstream 178187 1390673 ~ 1391921 (-) False G189149
TU223878 lncRNA downstream 200058 1305166 ~ 1370050 (-) True G189145
XR_004579218.1 lncRNA upstream 98801 1701050 ~ 1701433 (-) True LOC117598583
TU224004 lncRNA upstream 105115 1707364 ~ 1707706 (-) True G189233
TU224139 lncRNA upstream 164483 1766732 ~ 1769695 (-) False LOC113534879
TU224154 lncRNA upstream 222033 1824282 ~ 1824948 (-) True G189354
TU224152 lncRNA upstream 222786 1825035 ~ 1826471 (-) False ppp1r16a
XM_026928249.2 mRNA downstream 496882 1065924 ~ 1073226 (-) True LOC113535098
XM_034309225.1 mRNA downstream 614267 944848 ~ 955841 (-) True LOC113535162
XM_034309268.1 mRNA downstream 626781 926188 ~ 943327 (-) True LOC113535267
XM_034309267.1 mRNA downstream 627023 926192 ~ 943085 (-) False LOC113535267
XM_034309251.1 mRNA downstream 681190 882694 ~ 888918 (-) True becn1
XM_034309506.1 mRNA upstream 11747 1613996 ~ 1619414 (-) True LOC113535205
XM_034309198.1 mRNA upstream 20431 1622680 ~ 1650547 (-) True LOC117598490
XM_026927851.2 mRNA upstream 158585 1760834 ~ 1773520 (-) True LOC113534879
XM_026927853.2 mRNA upstream 158585 1760834 ~ 1773517 (-) False LOC113534879
XM_026927852.2 mRNA upstream 158585 1760834 ~ 1772413 (-) False LOC113534879
TU223922 other downstream 4848 1564890 ~ 1565260 (-) True G189180
XR_003404831.2 other upstream 592738 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 1190797 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 1197827 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 1249806 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 3296525 4898774 ~ 4898845 (-) True trnap-cgg_2

Expression Profile