RNA id: XM_026927855.2


Basic Information

Item Value
RNA id XM_026927855.2
length 2887
RNA type mRNA
GC content 0.45
exon number 4
gene id LOC113534879
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1760834 ~ 1773520 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACCTAGTGGCTGAAACTGTGATTTCTGGCCTTGAATGAGGGTGTGCCTGCAGAGCATTCCTTGCTGTTGCCATTGAGGTAAGACATAGTGGCTCCCTTTTCTTTTCTGCTGGCCCAGTCATCAGCATGCTGTCCATTGTACCTGCAGTTGatcagtgagaaaaagagagaaatgcagcACAAGGACATTGGCAAAACTTGCCAGACTTGCAGATATTCAAGAGCGGGCGGACTGAGCAATACATAGATGCCAGGAAAGAGATATATGCTAACTGGATGAGGTTTGTAAATTGTGCTCGTAGTGATACAGAGCAGAATCTAGTGGCATTCCAGTATCAAGGAGGTATCCTCTACCGCTGCTGTCGATCTGTCAAAGCAGGAGATGAGCTGTTGGTGTGGTATGAAGAGGAATACGCCAAATATCTTGGCATCCTGTTCGACTATCTCTGGGACAAAAAGTGCCCCACAAATGAAATGAAGAACAGCCTGCTGCAAGTCTTTTCCTGTTCCTTGTGTACATTTTCCTATACATCTCAAGTTTACCTACAAAGACACATAAAGAGATGTCACCATGAGGAATATATCAGACTGTTAATGTCTGGAAAGGATCATTATGAGAATATAACAACCACTGTAACCTTAAGTAGTCAGCAAATATCTTCTGACACGCTCTGCACTAATACTCATCTTGAACAAATGCAGAATGAAATGTATGTTAGTAGGATAAGTGATACTCAGCACAGTACTCTCCAACAACAGATCCACACAGGAGGGAAGTCATATCAATGCTCAGAGTGTGAGAAGAGTTTCTGTGAGAGAGGTAATCTGCAACGACACCAACTCATCCACGCAGAAGAAAGGCCGTATCCTTGCTCAGAGTGTGGGAAGGGTTTTACTCAAAAGAGTGATCTCCAACAACATCAGtgtattcacacaggagagaagccatatcGCTGCTTGCAGTGTGGAAAGAGCTTTTGTGAGAGAGGTACTCTGCAACGACACCAACGTATTCACAAAGGAGAGAGGCCACATCCTTGCTcccagtgtgggaagagttttagaGAGAGCTGTGCTCTTCAacgacaccagcgcattcacacaggggTGAAGATGTATCAGTGCGCTCACTGCAGGAAGTGTTTAACTCAACTGAGTTATCTCCAAGAACACCAGCGTCTTCACACTGGGGAGAAGCCTTATCAGTGCACAGTGTGTGGGAAAACTTTTACCAGGAAAGGGACTCTCACGAAACATCAACTCatccacacaggagagaagccgtatcctTGCTCCCAGTGtgaaaagagttttattcaCCAGAGCACTCTGCATCTGCACCAGATCatccacacaggagagaagccctATCACTGCTCCCAGTGTGGCAAGAGGTTCAATCGAAGCAGTAATCTCCAAGCACACaagctcattcacacacaagaGAATCTGTATCACTGCTCTGAaagtgggaagagttttactcacAAAATTACTCTCCAAAAacatcagcgcattcacacagaaGACAAGCCATATCACTGTTCAgaatgtgggaagagttttagcAAAAGAGGAACTCTTCaacaacaccagcgcattcacaccggagagaagccatatcactgctcacagtgtgggaagagttttactcaaCGGAAAACTCTCCTTGTGCACCAACACATCCATACAGGAGAGAAGCCTCATGAGTGCTTTCAGTGTAGAAAGAGCTTTAATGACAGAAGTGCTCTCCAACGGCACCAACGCATCCATACAGAAGGGAAGCCATATACCTGCTCCCAATGTGGGAAGAATTTTAGAGAGGGCAGCGCTCTCCAACGCCATCAGCGagttcacacaggagagaatcTGTATCAGTGCTCACAATGCGGAAAGAATTTTACTGAGAAGAGTTCTCTCAGGAGACATCAGGTCATTCATACAGAAGAGAAACCGTATCAGTGCTCGCAGTGTGGAAAAAGTTTTAGCAGCCTAGGTACTCTTCaacaacaccagcgcattcacactggagagaagccgtatcactgttCTGAGTGTGGGAGGAGTTTCACTCAACGGGGTGCTCTTCAACGTCACTGGCGCATTCACACAGGTGAGCaaccgtatcactgctcacagtgtgggaagagttttactcaaCAGAGTGCTCTTCAGCGACATCACCGAATtcatacaggagagaagccgtatccctgctcacagtgtgggaagcgTTTTATTCAAAAAAGTGATCTCCAACTCCACCGACGCACTCACACAGGGGAGAAGCCATATCCCTGcccacagtgtgggaagagttttaatcagCATTGTGCACTCAAACTCCACCGACGCACTCACaccggagagaagccgtatccaTGTgcagagtgtgggaagagttttaatcagCACTGTGCACTCCAGCTACACCAGCGCACTCACACAGGGGAGAAGCCCTATCACTGCACACAGTGTGGACGTAGATTCGGCTATTCAAGTACATTTAAAACTCACAGATGCACTAACGCTGAGTTAGCAGCTCTTAACACATGATGTCAAATTGAGAAAGACGATTATTAACTGTGTAATTTTACGTGAACTGGACATACCAGTGTTGACCTCCTGttgaagacaaacaaaaaacattgaatgttaatgttacacGGGAACAGGAACATATTCAAATTAAGAGTGTATGTTCTATTTTAGTCTTTATTGCTATTATGATGCACTGCATTAGTGAGTTCAACAATAAGACTTGCCAAATTTCTACATACAACaaaaatcaagaaaatgaacatgaaaatattttgaaactgtgtgtgttttacttatgcgtaaggaacaaaacatggtagggtgtgctgttttacaaaattaatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224004 lncRNA downstream 53128 1707364 ~ 1707706 (-) True G189233
XR_004579218.1 lncRNA downstream 59401 1701050 ~ 1701433 (-) True LOC117598583
TU223962 lncRNA downstream 158585 1570108 ~ 1602249 (-) False G189200
TU224154 lncRNA upstream 56733 1824282 ~ 1824948 (-) True G189354
TU224152 lncRNA upstream 57486 1825035 ~ 1826471 (-) False ppp1r16a
TU224153 lncRNA upstream 57595 1825144 ~ 1826471 (-) False ppp1r16a
TU224183 lncRNA upstream 120035 1887584 ~ 1887870 (-) True G189381
TU224188 lncRNA upstream 137313 1904862 ~ 1906435 (-) True G189385
XM_034309198.1 mRNA downstream 110287 1622680 ~ 1650547 (-) True LOC117598490
XM_034309506.1 mRNA downstream 141420 1613996 ~ 1619414 (-) True LOC113535205
XM_026928249.2 mRNA downstream 687608 1065924 ~ 1073226 (-) True LOC113535098
XM_034309225.1 mRNA downstream 804993 944848 ~ 955841 (-) True LOC113535162
XM_034309267.1 mRNA downstream 817749 926192 ~ 943085 (-) False LOC113535267
XM_034309395.1 mRNA upstream 9255 1776804 ~ 1804114 (-) False LOC113535291
XM_034309394.1 mRNA upstream 9255 1776804 ~ 1804114 (-) False LOC113535291
XM_034309393.1 mRNA upstream 9255 1776804 ~ 1804114 (-) False LOC113535291
XM_034309392.1 mRNA upstream 9255 1776804 ~ 1804114 (-) True LOC113535291
XM_026928278.2 mRNA upstream 45018 1812567 ~ 1822814 (-) False si:ch211-217a12.1
TU223956 other downstream 189761 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 195574 1564890 ~ 1565260 (-) True G189180
XR_003404831.2 other upstream 427438 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 1025497 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 1032527 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 1084506 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 3131225 4898774 ~ 4898845 (-) True trnap-cgg_2

Expression Profile