RNA id: TU224152


Basic Information

Item Value
RNA id TU224152
length 1437
lncRNA type sense_over
GC content 0.35
exon number 1
gene id ppp1r16a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1825035 ~ 1869993 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTATGTAAGATTAACCAGTGCATTAATGCAGATCAGTGTTTGATAGAGTgatggggggaaaatgtgataCTCAGCACATGGCTAAAGAAGCTGTAGAATGAAGCTGACGCTCTGCTACACACATTCCTCATgaagaataattaaaaacaataatccAGCTTGCCGTGTCTAGGGCTGGCCCGAACTGCATTTACAGGCTTCAGATATCCATTCTCAAAACCattaatgtttctgtttcatAATTAACCATTCCTTTATGTACATATGTTCAAAATATATCCATGTGTCCACTTCAGTCTCCCAATATCACACCCTTGTGAAATCTTTTAAGCAATAATATTGTTTGAtttggtgggaaaaaaaattatacaatatattttgttgtAAAGATTGATTCAAGGAAACACATCCAAAATGGTCACGTGACCATCTCCCTGGAACTGAATCCCAAATAACTTTGAAGATACAGTGCACTTGATAAACCGTTATTTCAGCCTGCGTAGTGCGCTTATGTAAGAGCTGGAATTTAAAGACGAAACTTCCGATTGAATACGCAAATGATTCGGGCCAGCCTTAGATATCATATTTAATAAGCGTTattaaaatttctaaaaatattaaatattgttgACTGTGTTATTGCAGCTGCAAATACAGTCAGTTCTTATTTTACCATTTTTCTCGTTAGTGCTCACAGCAGAAAAGCTTCCCGTCACATGAAGACAATTTTGGAGAATGAAACGAATTTGTATTTTTGCtaacatacatttatttgtcacattatatatatatatatttttaatatcatcCAGTTCTTTATTGTGTTAATTATCTCTAAAGAACATTTTTCTTGTCATTAAGCTGTACGTGCTTTAAAAATACGAAAGTTATTAATCGTAGGAGAACTTACCTTTTGTGCAGGAAGGATGATGATTGGTCATGTGCGAAGACGAATGAGTCTAGCCGCATTGCTAGCTAACGGAAAAAAACTTATTGTGCACTACACGATTGAgatgtttagcatttttatgtttgatttgggacacgtccaGCATGAACGCTGTCAGTTTGAAAATGTGTCGAAATCTGATCGTTTTAGCTAgttcactagctagctagctaagaatGCTACCTCGTGAATTTGAATCCTGACAGTTCGTTTCGCACAAAATTAAAACTCATGAGTAAAAGTTATTAAACGTCAGAAATGCGATAAAAGCAAAACATTGGTGTCtgttgttgtggtgtttttatgATGATCTCTCGTAGCTAGCGAGACGACTAGTTACTCTGTGTTTCTCACGTAATTATTCAGAATCATTTCTGGCACAAgtgatgaaatttaaaaaaaaaaaaaaaccaggacCTGGAAGATTATATATGAAAATTTttttgagatttatttatttatttatttgatgaaGCACTGGACGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224154 lncRNA downstream 87 1824282 ~ 1824948 (-) True G189354
TU224139 lncRNA downstream 55340 1766732 ~ 1769695 (-) False LOC113534879
TU224004 lncRNA downstream 117329 1707364 ~ 1707706 (-) True G189233
XR_004579218.1 lncRNA downstream 123602 1701050 ~ 1701433 (-) True LOC117598583
TU223957 lncRNA downstream 222786 1600442 ~ 1602249 (-) True G189200
TU224183 lncRNA upstream 61113 1887584 ~ 1887870 (-) True G189381
TU224188 lncRNA upstream 78391 1904862 ~ 1906435 (-) True G189385
TU224190 lncRNA upstream 92999 1919470 ~ 1923367 (-) True G189386
TU224192 lncRNA upstream 97555 1924026 ~ 1925701 (-) True G189388
TU224194 lncRNA upstream 97555 1924026 ~ 1925701 (-) False G189388
XM_026928278.2 mRNA downstream 2221 1812567 ~ 1822814 (-) False si:ch211-217a12.1
XM_034309397.1 mRNA downstream 2221 1812567 ~ 1822814 (-) False si:ch211-217a12.1
XM_026928277.2 mRNA downstream 4640 1812567 ~ 1820395 (-) True si:ch211-217a12.1
XM_034309394.1 mRNA downstream 20921 1776804 ~ 1804114 (-) False LOC113535291
XM_034309383.1 mRNA upstream 62345 1888816 ~ 1903996 (-) False oplah
XM_034309382.1 mRNA upstream 62345 1888816 ~ 1902760 (-) False oplah
XM_034309381.1 mRNA upstream 62345 1888816 ~ 1902759 (-) True oplah
XM_026928444.2 mRNA upstream 115225 1941696 ~ 1982877 (-) True kcnh4b
XM_026928582.2 mRNA upstream 226313 2052784 ~ 2078967 (-) False LOC113535332
TU223956 other downstream 253962 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 259775 1564890 ~ 1565260 (-) True G189180
XR_003404831.2 other upstream 368516 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 966575 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 973605 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 1025584 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 3072303 4898774 ~ 4898845 (-) True trnap-cgg_2

Expression Profile