RNA id: TU224192


Basic Information

Item Value
RNA id TU224192
length 1564
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G189388
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 1924026 ~ 1925701 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aatatttataaaactttattaCCATCTTTTGTCTCCCAAGTTACATCAAATACACACTTAacatctaacaaaaaaaaaggagaggagcAGAGTAAAGCGCGTCAGAGTGGGAATGCAGACGTCAGGATCCgttttgaattaataaaacagaaatcacTAACAGATCGGCACACTGGAGCCGTACGACATAACAGCACCGGTCTGGAACGGGAATACTgcagcaggtacacacacacaaatcacgaCATGTCGTAAGAGATTATTCACACGGACACTAATGAGATGTTACGGATAGACATGAGGCATGTGCCGATACTGAATTATTCAGACTGATTCAATGAGTCACAGCTGACTGATTCAATGAGCCAGAGCTAACAATTCAATGGATCACAGATGACTGATTCAATGAGTCACAGATGACTGATTCAATGAGTCACAGATGACTGATTCAATGAGGCAGAGCTAACAATTCAATGAGCCGTGTAGTAGTGTTATTTTCTACTATTTTCGCAGTGGTAGcccagtggttaagacgttggactactgatcggaaggtcataagttcaatccccagcaccaccaagctgccaccgCTGGgccccctgagcaaggcccttaaccctcaactgctcagttgtataaatgagataaatgtaagtcgctctggataagggcgtctgccaaatgccataaatgtaaatgtaaatgtgaggCAGAGCTGACATTCAGCTGACTGATTCAATGAGCCAGAGCTAACAATTCAATGAGTCACAACTGACTGATTCAATGAGCCAGAGCTAACAATTCAATGAGTCACAACTGACTGATTCAGTGAGCCAGAGCTAACAATTCAATGAATCACAGCCGACTGATTTAATGAGTCATCCACAGCTGATCAACCTTAATTGAATCAGTGAACCACATCCTAACAGTTCAATGAGCTACTGCTGAACGATTGAATATGCTACCATCATCTGATTCAATAAGCCACAGCTGATTAATTTAATGAGTCATCTGTAACTGATTCGGTGAGCTTAACGATTCAGAGAGCTTCTGCTGACTAATGGGTgatgattcattcattaaacCAAGGAGTCACTCAACTGATCATTGAATCACAGGTGACCAGTTCACTGAGCCAAACCTCAGCTGGTGTCACAGCCAACCGAATCTAGGATTCAAAACCGACCGATTCAGTGATTCACAGCTGATCGAACCACTAAACCAAAGCTGATAAAATTATTGCTAACCTAAACGCTGAATCAACGCCCACCACTCAGACGTTACACTGCGATATTTGGCATTCATAATACTATTTTCATAGATATTTTAAAGATTATCTCTGCTACAGTTCCGTTCATCTGAGCTACGGAGCTAGTGAGCGATTGTTGAGTAAACCGGTGTCACATGCACAGGAAGCTTACGACAAAGCCAAATCCTGAGTAATTCACGTACACTTAAAAACGCTGACCAATAAGAACAGCTACTGATAAAGACATAGTCAATACATCATGGTAAACTGTAAAACGTaatatcggcacatgcctaCTGCAAACGGCATTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224190 lncRNA downstream 659 1919470 ~ 1923367 (-) True G189386
TU224188 lncRNA downstream 17591 1904862 ~ 1906435 (-) True G189385
TU224183 lncRNA downstream 36156 1887584 ~ 1887870 (-) True G189381
TU224152 lncRNA downstream 97555 1825035 ~ 1826471 (-) False ppp1r16a
TU224153 lncRNA downstream 97555 1825144 ~ 1826471 (-) False ppp1r16a
TU224220 lncRNA upstream 61634 1987335 ~ 1988231 (-) True G189411
TU224223 lncRNA upstream 63818 1989519 ~ 1990155 (-) True G189412
TU224262 lncRNA upstream 123129 2048830 ~ 2049418 (-) True G189451
TU224263 lncRNA upstream 123129 2048830 ~ 2061265 (-) False G189451
TU224331 lncRNA upstream 221011 2146712 ~ 2146915 (-) True G189512
XM_034309383.1 mRNA downstream 20030 1888816 ~ 1903996 (-) False oplah
XM_034309382.1 mRNA downstream 21266 1888816 ~ 1902760 (-) False oplah
XM_034309381.1 mRNA downstream 21267 1888816 ~ 1902759 (-) True oplah
XM_026928116.2 mRNA downstream 54033 1825038 ~ 1869993 (-) True ppp1r16a
XM_026928278.2 mRNA downstream 101212 1812567 ~ 1822814 (-) False si:ch211-217a12.1
XM_026928444.2 mRNA upstream 15995 1941696 ~ 1982877 (-) True kcnh4b
XM_026928582.2 mRNA upstream 127083 2052784 ~ 2078967 (-) False LOC113535332
XM_026928580.2 mRNA upstream 127083 2052784 ~ 2078967 (-) False LOC113535332
XM_026928581.2 mRNA upstream 127083 2052784 ~ 2067311 (-) True LOC113535332
XM_034309384.1 mRNA upstream 127083 2052784 ~ 2064864 (-) False LOC113535332
TU223956 other downstream 352953 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 358766 1564890 ~ 1565260 (-) True G189180
XR_003404831.2 other upstream 269286 2194987 ~ 2210979 (-) False LOC113547489
TU224780 other upstream 867345 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 874375 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 926354 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2973073 4898774 ~ 4898845 (-) True trnap-cgg_2

Expression Profile