RNA id: TU224394


Basic Information

Item Value
RNA id TU224394
length 1173
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id G189563
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2308226 ~ 2309418 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTATTGAGTATAAAAAAGTTCTATATACAAACATGAGTGCAtcattccatattttttttttttttttgatggtgaTAGTGGTAAGCATCAGATGATGCCTATCAAGCAAAGTAAGCTAAAACAAATGACATCGACATTCTTCAGAGGTGTCAGAAGAAGTACTTCAGAAGTGGAAGTGTAATGTTCAAATCAGGAGTAACTGTGAAGCCACAAGCTGTTAGGTTACTGGAAATCAGTATGGTTTGCATGGTGCTATCACGCAGTggctttgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgctataagGCGGCAATGGCTTTGGCAGCTACTCTTCGGCCCAGCGGGAGCGTCAGATCTGTGATGGACAGGACAACTTTGGGTTTGGCGAGCGCGTGCAGCTTGACCAGCTCAGAAacctgtgaaaacacacacacacacacacacacacacacacacacatatgaagaTCTTACATTACCACAGTAACTTCaggttgttgttgctgttgttgttgtagttctTTCGGCTGTTCCCGTTACAGGTCGtcacagcggatcactggtccgTGTGTTTGATTTGTCGCGGGTTTTACGCCGGACGTCCTTCCTGACGCAACTGTCCCATTTTATccggcttgggaccggcactgagagcgcactcccagtggctgggttccTCAGTAACTTGAGGCAACAAGACATATTTCGTCTCCCAGTTTTTATAATAATAGCTATTTGACATCATCATATCTATGTGAGGACCTTTGACACTGTTCTGTCGTTATGAGGACCTCTGACATCATCatatctttgtgaggacctcTGACATTGTTCtgtctttgtgaggacctttgACACTGTCCTATTATAAAGAACACATTTAACTCTACTCTATCActgtgaggacatttgacactgtcgGATCATTGTGAGGACTTCTGGTCCTTTTGGCTACAtaagtacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcaccataGTGAAGGGCATGAACTGCAGGATGCTACCCCGGCTGCCCTGCTCcgaacactccacacactcctcGATGAAACTCTGCACGAACTGGGTGTGAGGGCCGGCGGTCTTCGAGCTCAAGATGGAGGAGATGAGCAAGAACAGATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224386 lncRNA upstream 12921 2295086 ~ 2295305 (+) True G189555
TU224296 lncRNA upstream 162470 2143152 ~ 2145756 (+) True G189477
TU224099 lncRNA upstream 367970 1939952 ~ 1940256 (+) False LOC117598558
XR_004579220.1 lncRNA upstream 382522 1923984 ~ 1925704 (+) True LOC117598584
TU224074 lncRNA upstream 382547 1924023 ~ 1925679 (+) False LOC117598584
TU224401 lncRNA downstream 7900 2317318 ~ 2318307 (+) True G189570
TU224528 lncRNA downstream 215638 2525056 ~ 2528820 (+) True pyyb
TU224489 lncRNA downstream 281820 2591238 ~ 2609497 (+) True G189626
TU224549 lncRNA downstream 296465 2605883 ~ 2608078 (+) True G189678
TU224557 lncRNA downstream 305279 2614697 ~ 2615755 (+) True G189684
XM_026947910.2 mRNA upstream 3939 2302233 ~ 2304287 (+) True LOC113547531
XM_034309182.1 mRNA upstream 21172 2270632 ~ 2287054 (+) False lrrc3ca
XM_026947884.2 mRNA upstream 21172 2280510 ~ 2287054 (+) True lrrc3ca
XM_026947886.2 mRNA upstream 21172 2283308 ~ 2287054 (+) False lrrc3ca
XM_034309183.1 mRNA upstream 21172 2285069 ~ 2287054 (+) False lrrc3ca
XM_034309548.1 mRNA downstream 37627 2347045 ~ 2361095 (+) True top2a
XM_034309547.1 mRNA downstream 37627 2347045 ~ 2361095 (+) False top2a
XM_026947897.2 mRNA downstream 84658 2394076 ~ 2486796 (+) True raraa
XM_026947899.2 mRNA downstream 157240 2466658 ~ 2486796 (+) False raraa
XM_034309326.1 mRNA downstream 180391 2489809 ~ 2502830 (+) True mki67
TU223925 other upstream 642889 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2087858 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 451275 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 660707 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 660707 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 929026 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 1091849 3401267 ~ 3405009 (+) True G190212

Expression Profile