RNA id: TU224489


Basic Information

Item Value
RNA id TU224489
length 2789
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G189626
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2591238 ~ 2609497 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGAACATTTTAttgtacaaaagaaaaaaaaataatacaaaagagagctttaaaaagtataaaaagcaCAGATCACAAGTCAAAACCTACAAAATAGAACATGCTCTTTTTGCCAtataaaaatcaaaattttttcattcaacaggttaaaaaaaaaaaaaaaaaaaaaaaaaaaatcatctgagTACATCATCTTAAAAACAATGGCACGTTTAATACAGGAAGTTATACTAACTGTAATAAAGTCACAGGCCAGAGTTTAAAAATACttgtaaaacaaacaactgttattaataataacaataataatagctgTTATGAAATTATAGGGATCGTTCTGGGcaaatttcaaatttacacacattttccacGCAGCTCAAACGTCAGCGATCAGCCAGAATGTGTAACTAATTAGTTAGCTTTAGCAGCTATCTATAGCTACTAAGATTTCTCATTGGAACGAAATAAAAAGACACTGGACCCACACCCACAAACAACGACGACAGCGGTCGGACATGGCCACAAGAGATAAACTACAAGCGTACATGGCGCTTGCGctacatatttattacatatttgtgGTTTACGTGACTACTTTGTCTATAGTTTGGAAACAAGTACCAACTAAATTCAATAAGCTAATTAAGGGTCGTTGTAcgctatttgtgtgtgttagctaaATATAGATAGCTATGTAGATTATTTCATCTCCTTGTACCTTTAGACtagatgaatataaaaatagctaAATATCTTGCTAGCTAGATAAACAtattctagctagctagctagatatttAGTTAGAGGAGATAAATATTACCTACATAAACTAAATAGTTTGCTAGTTCAACGTCAGGGAATTTgctagaagaaaaaaacaaaataaaaaacacccaAATCactaacatttaacatttgcaTGACGCGAATGACTGAAAATTTCAGGAAACATGTCTCAGCTGATCGACTTGCGTTTAAAGAAAATGTGGAAATTTGATTTTAGCTCAGATCGTCCCTTTAAGTGTCCATGTTCATATGATCATCTCTCCTCCTGAGTCGAAACGTTTCTACTTTTATATACGGAATGTAAGAAGCTGAAACCAGAGCAAATACACTTGAACTAAACACGCAGTATGGCTTTAATATTGGCGAGAAGCGCTGCCGTCGCTTGTTGTTACCAAGGCAACAAGCTGGTAAGCTCAACCCTGCTCAGGAGAAGCGTATTAAACGTAAACAACAGTAAATCTTAATAAACTTCCATTCATCATTTCCACGCTTTGGTTCATATGAACGAGAATACAGCTTAGACGGAGTGCTCAAGTCTGCGCTATGGATGGACGTCTTTAATTAAAGCGTTAGCTTGTAAGATACACAGTGCTGCGTAAGTTTTCACCCCCTGCCtcctttgaacttttccacattatgtagaactgaaatggatttatcTGGGATGATATGTCATGGATTTGTGAAGTTGTGAAAATTTTTGCTTGCTGTAAAACCCCTAAATGAGTCATGGGGGAACTTTGTGTGCAATTAAAATATCCTATGATCTcctatgaaaatataaatacgGTTTCTGGAGTTTTTCACATAAATATACAGCATCATAACGACCAAGgagctgccaaaacagctccaGGACAACGTTCTGGAAACGTATCAAGGgtttggttattaaaaaaataaaaaataaatcctatacTTCGAACAATTTTGTGAGGAAAtgcaacactgctcatcaccctgagaacaccatgaagcatggtggtggtagcatcatgtcgtggggatgcttttcatgAGCAGGGACGGCGAAACGGGTCATGGCTGAGGGCAAGAGGATGAATCCAAACAAAGGGCAACAATTTTTATCGTAGAATATTATGCAAACTATTTTGGTCCCACCCCCCTTcaatattatgattattttgtgtagatttatgaCACAATcctaattaagtccatttcGTTTCCAGGTTTTAACACGACgtaatgtggaaaagttcatcGGTGGGTGAGGCACTGCATTTCCACCGCCATCTACAGCATTGTCGGAAGACGCACACTTTATTAGACGAGcaaaaatgaaccaaaatgTGGGAACAATTGTATTAATTTCAAACTTGACATAGCAAACAAAGCTCAAACAAAGTAGCAGATTTCCTGACTCTGGTTTAGTACCACATTGAAACTAAAAGATTGTGCAtaaggaaaaaaacccaaaaaacttttaaatgtcCTCTCCAGGTTTCAGTACCGTTCTCTTTATCCAATCGCTGATCAAGGTTCAAGTCTCGATCTACCTAGCGCTCTTACGAGGGAGCTCGGAGGCAAAATCCAGCTCTCTGATTGGAATGATCAGGATTAGTAAATCTGGAACGTCATCTGATCTTGGATCAACGTCCGGAGAACAGGACTCGGACTTCCTCTTTACATTTAAGGCCATCTTACATCACTTAAAAATGGCTTACACTCCTACCTGCTGTTTATAAACACACGTCTGTGTTCTCTCACTGTTATGTCTGGCACAGTGATGCtagacacgcgcacacacacacacacacacacacacacacacacacacacacacacacactgtaaacactaccTTTTGGGTTAAGTCTCCTAAATAAGAGACACCTGTATAAAACTCCACCTTCCATTTTATCTCATTggcaaaaataagaaacaaggCAGTTATGGCTTAGAAACTTGTTCGAAACTTGTtccccaccccacacacacacacacacacacacatacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224528 lncRNA upstream 62418 2525056 ~ 2528820 (+) True pyyb
TU224401 lncRNA upstream 272931 2317318 ~ 2318307 (+) True G189570
TU224394 lncRNA upstream 281820 2308226 ~ 2309418 (+) True G189563
TU224386 lncRNA upstream 295933 2295086 ~ 2295305 (+) True G189555
TU224296 lncRNA upstream 445482 2143152 ~ 2145756 (+) True G189477
TU224557 lncRNA downstream 5200 2614697 ~ 2615755 (+) True G189684
XR_003404829.2 lncRNA downstream 32344 2641841 ~ 2644184 (+) True LOC113547470
TU224817 lncRNA downstream 264658 2874155 ~ 2875297 (+) True G189916
TU224838 lncRNA downstream 315717 2925214 ~ 2925571 (+) True G189933
TU224839 lncRNA downstream 318304 2927801 ~ 2928169 (+) True G189934
XM_034309412.1 mRNA upstream 16464 2543438 ~ 2574774 (+) True mpp2b
XM_034309413.1 mRNA upstream 16464 2543443 ~ 2574774 (+) False mpp2b
XM_026947871.2 mRNA upstream 17554 2531080 ~ 2573684 (+) False mpp2b
XM_026947872.2 mRNA upstream 17554 2531548 ~ 2573684 (+) False mpp2b
XM_026947869.2 mRNA upstream 17554 2548532 ~ 2573684 (+) False mpp2b
XM_026947904.2 mRNA downstream 47363 2656860 ~ 2697247 (+) True ngfrb
XM_026947846.2 mRNA downstream 289392 2898889 ~ 2906026 (+) True LOC113547481
XM_026947842.2 mRNA downstream 296657 2906154 ~ 2923348 (+) True LOC113547478
XM_034309597.1 mRNA downstream 296657 2906154 ~ 2923348 (+) False LOC113547478
XM_034309596.1 mRNA downstream 296657 2906154 ~ 2923348 (+) False LOC113547478
TU223925 other upstream 925901 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2370870 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 151196 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 360628 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 360628 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 628947 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 791770 3401267 ~ 3405009 (+) True G190212

Expression Profile