RNA id: XM_026947882.2



Basic Information


Item Value
RNA id XM_026947882.2
length 621
RNA type mRNA
GC content 0.50
exon number 4
gene id pyyb
representative False

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2525056 ~ 2528820 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CAGCAACGTTTGAGCTGCACCTCTGCTCCGACCCTCCACGTCCACTACACAACTCAACTGACACAATGAAGTCTTGGTTGGCACCCGTAGCCGTGGTCCTGTGTATCCTGGTGTGTGTGGCAGAGGCGTACCCGCCCAAACCTGAACCTCCTGCAGGAGACGCAGGGCCCGAGGAGCTGGCCAAGTACCACACAGCGCTGCGCCACTACATCAACCTGATCACCAGGCAGAGatatgGGAAGAGATCCTCTCCGGAGGTAGAGATGGCTGAGCTGCTCTTCGGTGATGATGAACAGGACGTGAGGCCGCGaatggACAGAATGGATAATGGTTTTGCCTGGTAGTCGTCTCACTGCATTCCTGCACTCCGCATTTGTCATCTCTCCGTCCTTCTTCATCCCTTTCCCTCTCTGCCATCTTCCTGGAAGTTATACCAATCAGCCAAAGCAGCATCACAATATTGGCAcatgtatctctctttctctctctctttcacgctctttctctctctctgaatctctgtctgtttctctctgtttgaaagttttctgtgaagcgacaattgtaaataatttgttaCTCACCCAATTGCGAATAATAAAGAATgactaaatgttaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU224401 lncRNA upstream 206811 2317318 ~ 2318307 (+) True G189570
TU224394 lncRNA upstream 215700 2308226 ~ 2309418 (+) True G189563
TU224386 lncRNA upstream 229813 2295086 ~ 2295305 (+) True G189555
TU224296 lncRNA upstream 379362 2143152 ~ 2145756 (+) True G189477
TU224099 lncRNA upstream 584862 1939952 ~ 1940256 (+) False LOC117598558
TU224489 lncRNA downstream 62521 2591238 ~ 2609497 (+) True G189626
TU224549 lncRNA downstream 77166 2605883 ~ 2608078 (+) True G189678
TU224557 lncRNA downstream 85980 2614697 ~ 2615755 (+) True G189684
XR_003404829.2 lncRNA downstream 113124 2641841 ~ 2644184 (+) True LOC113547470
TU224817 lncRNA downstream 345438 2874155 ~ 2875297 (+) True G189916
XM_034309634.1 mRNA upstream 9864 2503394 ~ 2515254 (+) True tut1
XM_026947816.2 mRNA upstream 9864 2503394 ~ 2515254 (+) False tut1
XM_034309328.1 mRNA upstream 22288 2489809 ~ 2502830 (+) False mki67
XM_026947871.2 mRNA downstream 2363 2531080 ~ 2573684 (+) False mpp2b
XM_026947872.2 mRNA downstream 2831 2531548 ~ 2573684 (+) False mpp2b
XM_034309412.1 mRNA downstream 14721 2543438 ~ 2574774 (+) True mpp2b
XM_034309413.1 mRNA downstream 14726 2543443 ~ 2574774 (+) False mpp2b
XM_026947869.2 mRNA downstream 19815 2548532 ~ 2573684 (+) False mpp2b
TU223925 other upstream 859781 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2304750 137521 ~ 220368 (+) False ccser2b
TU224759 other downstream 231976 2760693 ~ 2761010 (+) True G189864
TU224820 other downstream 441408 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 441408 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 709727 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 872550 3401267 ~ 3405009 (+) True G190212

Expression Profile