RNA id: TU224575


Basic Information

Item Value
RNA id TU224575
length 5425
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G189702
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2394026 ~ 2399476 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTATAGCCATGGACTCTTGATATGTGTAATGATACTGTAGTGTAACAGGGGCGAATTACAAAACCACGTCAGCACTTTCACAACAAATAAAAGGCCGAACAGCTTGTTCCAGTTGGGATGCTGATAGCGGGCAAAGGACATGAAGCCAAGAGCTGCAATGctccatcattattattatgattatggcCTATTTCTTCCCAAGTACACATATgggcttttctttttcaatttgaCCAGTAATGTAGAAGCTTTACGGGTTATTTCCTGAACTCCTGTTACCAAAAAGAAGCCTGAACCAGTGGCATCTGTTTTCTGCAGAGGACTTACTTTCTTCCAGTTTCACTTCAGTTAATAGTAACACAGCACCGGAAGAATTCCCATATCACGCCTTGTCTCAGTTCGGATTGTTGTCGAATCTGTGGCCGCTTCTTTCCCACAGATAAAGTCGAGTATCATGGCGTTGGAGCGGGAAGCACCTGAAGAGGCCACTTGGCAGCAGGGACCTCTTTTACTGTAAGCGCCTGTGAGAGTACTTCGCCAAATGTGTTGCAGAAAACGGCGCGCCCCCTTTAAGAGGCTGAAACGAGGCAGCTGAGTTATCCTATCTCTCTGACCTAGTTGCTCCCGCTCCCTCTCATCTCTCCATTCTTCATCTCGCTGGGATCTGTGCTGTCTGACACGTGAAAACTTTAATACCATCAAAGACGCAAGGAGAAATAGCCGAAAAGACGGATGGGTTGAGgggatataaaaagaaaagcctTCATCCCTTGCGATAGAGTCGAGTCCTGGTGTGGACTCACCAATGGCAGAAGAGCATCAGCATTCACAGAGCTTCCGCACTCGTCTCTCAGCACATCATAGGGGTTTAACTTCCCAATCCTGCCTTTCATTCACAATCTCTCTGCACTTTTCAGGCCTTTCCCACACTCCCCCTCTCCCCCGAGAGACGCTTCAGGGTGAATCACATGTTCCTGCGGCTAAACCAAACTGCCGCAACCTCGCTGTCCTGTGACCGCTGCATTAGCCACAATGTTCACTCGGAGAAACCTCCTCAGCTGCTGTGCTTGTCTCGAGGAATACAAGATGGATTACACCGACTATAATAAGTATTGCTCGAAGCTGTCCACGTGCAACCTACTTATCAACCATCTACTAATGACTCATAGCTTCTGTGATAACCATCTCAGAAAACAAATTATGTTGtgcaaattatgcaaaataATGGCTTATGTGTTTCCAGAATCTACTTCAACCTCCTCTGTGAAACTATTAGCATTGCAGCTGTAACTCTGCTAGATACTAAAAAGCGCCTCTGGCTCAGGGTTCTTGAAGTTTTCGCGGTGTGCTTGTGATTATATGGTTTATGGTGTCTACATGTTTCTGTAAACTTTGATAACCAGACAAAAAGATAAACACTGCTGATAAAGGCCTGTTGTATATACCCGCTCCTCAATATCTTCATGTATATTGTAATGAATTTACAATGTATGCACAAGGTCTTTCAGCTAAAATATGGGATTATTAAGATGAAATGCTCATGAATATCTTGAAAGACTCCCAATGTCATTTTACCAGGATTCAAATATAATTCTCTACTTTTTACAACCACACTGATTGTTGGGAATAACGACAACCAGTTATGAAACAAAGACTAAACATTCTGATCACTTCTCCAAGCAGGACAACGGAAGCTCTTTTTGGCAAACCAGGTTTTACGCCTCTGCATGCCACGGCTCGATTCCTCAGCCCTAATTTGTCCATGTGGTTTGGGCTAATCTGTTCGCCTCGCTTGGTCTGACCACATCAACACAAGGCCTGAACAAGTGGGAGGCTCCTGGCAGCTGCGTACCAGTCCAATAGCATGGCACATGGCTGAGTTCTCTCCAAAATCACAGCCTGCTTGCTTCAGAGCCAGACAGCCTCCAGAAACAGATTCCACAGTCTGATTCCAGATCTAATGCAATCTAAAAACAGTGTGTACTTCCAGAATCTGCTCCTGGAGCTAATATTTTGGAGAAACAATGCCTGATTTCTTCATTGCCAACATCACAGCCTTCCGGAGATGACGTTCTCCTAAAACAGAACCTGTCTCCAGAGCTAATGTCTCCAGAAACAGAACCTGTCTCCAGAGTTAACACTTTCCAGGAACAGAGCCCGCTTTAATTGGAGAGTCCAAACAGATTCCAAAAACAAGGCCTTTTTGCAGAGGTGAATATCCAGataatgcttaaaatgagcaacTTATATAAATGGAGCCTGTTCTCAAAGCTTAACAGCTTCTAGAAATAAAGCTATGACCCCCACAAACAGAGCCTGTTTCCATAATTAATGTCTTCCAGAAACAGACTCTGTTTCCTTCAATGCCAAAGACCCTTCAAAATCAAAGCCTGTTTGCTGAGTTTGCTGCTATCTTTAGAGCAGGTTTCCAAAAATAACATCCTCTAGAAACAGAATGTACTTCCTTTAGAGATGAACAACATCCAGATAAAGGACTAATGGTGTCTATGATCAAAGCCTGCTCTCAGAGTTAATAATCTCAAGAAACAAATCTGTTTCCAGAGCTAATTCTGTCCACAGCCTGCTTTCCTCGGAAGTGAGTCTTCCGGAAACCTACTTCCAGAGTAAAAGTGGTTTAAGAAACAGCATCTAACTCTAGAGTCTGATCTCCAAAAACAGAACCTGCATTCTTCAGAAATGCTTGTCTTCAAGCTTGCTCTCAGAGCTAAAGGGCCTTGAGAAACAGCACCTGACTTAGACCCAAACAACCTGCAGATACCAACCCCGCTTCCAGAGCTGCCATTGTCCAGAACCAGGGCTGGCTTTCTTCAGTTGTATGTCCTTCAGAACGAGAGCCTATTTGGTTCCTACAGAACCTAAACAACTTCTGGGAACTGCTTCCAGAGATAACAGCCTCTGGAAACAGAGCCTTAATTTCTTTGTTGATCTAAAGTGTAGAATTTGCAGGAAGTCAAGAGAATAATCAGGATTTTCAACACCCATTTGAAGAGTCCAGTCATCTTTACTAATTGGAAATGACCATCATGCTGAACTGTAACTTAGAGTAGAACTCTAACTCTATAGAGGATAGAGAGATCCTTTGAGACCCAGGATGTAGGGGTTTTTCAGGAAGACATCAGTAAGTTCTGCTGCAAACAATGTGTatagttgcaaaaaaaaaaaaaaaaagtataagaCAAGGAACAATTCATGCAAACAACCAATCCACAAATCCCTAACTGGTTTAACTTGTGCTTTAAATGTAGATCTGACAGTTTGACACCATCAGGACCCAGTTCGGTGACACAGCACTATGCTAAGCCCTGCAACAATAGCACCATTGTCACAATCACAATCCACTGCAttgtatggtttttttttgtacactcCACATTGACACACTCCGGTCCTCTACAAAACACTCTGAAAACGTCCAGTCCTCCTGCCGTCCTCTCCCAAAAAACATTCTGTTCCAAGGAtcatgtggggaaaaataagttaaataaacCATCAGAAACTCAGCggctgaaaaagaaataaataatttttgccAGGAGATGTTGAGTCACtatcacgttttttttttcttttgctttttccaTTCTGTGTTCTGGCATTCATCTTATAAGGAAGTGGAGAGAGGgaaaagggtttttttctggTGGAACTGGTGTGTCAGAAGAATTGATTGAGGTAGAACAGTGTAACATGAAAACACTTGTCAGCGTAAACAGTGATTAAGCGTGCTGTAATTGCGTAAACTACTATTTATATCAGtgctggattgtgattggtcagaaggtgttgattcattttctatatcagcagctctgacagtagtgcaggtttatatcaatgcgctcgtttaatatgttatcgtttctatacgCTCCACACAAacgaattttttaaaatcatcgatatggtgaagatgtctatttaaaatgtatggaaggagtctccagtgttaacGCTTTggatcagtcagaggtaaagctgtaacttttctgacatcttcaggacagaggagtttacgcgtTGCAGTTCCACCATACCAGCCTGTCAttagttattttcctatacaaGCACACCACGGAGTATATATAACATAACTCCATACTACGTTATTACGAGTTTAGTTAAAAAGTTAACTACGATGGCGTTGTGGTACCTACGTTCCAAGAGCATAATGTTAGCATAGTGACAGCATACTCTGTTACTAAGCTGGTAGCTAAAATGTCATTTCCGTGTTGAGCCATTATTGCCCTAAAGGCAGGTAATACTTACTCAGGTATAAGTATGTCATAATTGTTACCAAAACGACATTGCAATTTGTTACCAACCTGACaggttcattcattctttcatgcTAATGATGGTCTGTTAtcactttggttaacggtttacccacaatgctgtgctgacagtagtgcagtggAAATTAGCCCACGCTTCATCTCTagctaaagagagcgatgcagcggcgctttagtcctttagtcctCATCGAAACAGATCGTTCTGATACCTCTGTCAACGTCATTGCGCTGGTCATCTCGTAGctcgctaactagccaagccgCTTCAACGTacgctggatttctcatcaGTGTGATGCTGAACATCGCCGGTGCGTGACAGAAGACGCTCTTGCGAGCCAACGGTGAAACCTTATGTTTGTTATCATCGATGACATGATAATAACAATGTCCCCATGTGACGTCAGTGCAACACACTACccctaacttctcacaggaataacggGAAATGCATCAACATCCAGCACATGTGCAGCAGACTCATGAAACACATCAGAAAGATTGCAGTGGGAACGTGTTGAATGTGGTTCAGGGAGCAGTTTAACTTTAAAGAACATGTCAGGAGGAGAGGCGATGCTGAGCAGGATGACAGCTCCATCAGACACAAGCCGGAAGTTtcgagaagaagaagaagaagaagaagacggaGGAAAGAAAAACCTCATGAATACCTGTGAGCTGTAACCTGTTGGCTCCGCCCACCGGCGTCTCGCGACCGATCCGAGTTTCTCTCCGCGGCTCGGTTCTGACGCGGTGCGCTGTGAGGATGTTACTCCACGGTGTCGTGCCGCCGTTTctcgtgctgtgtgtgtgtgtgtgtgtgtgtgtgtaaccctCCCCGTGCACAAGTGACCTCCAAATGGGAAACCGGAAAGCGGGCTCAGAAACGGCGCGCGCGTCGGACCGACTCGGACGGGGAGACGGGAAGCGGGAACGGAGCTCCGCGCGAGCCAGAGGAAGCGACAGCGGCCATTTGGAGTCACGTGCCTGCgtatgcaagtgtgtgtatgtctgtgtgtgtgtgtgtgtgtgtgtatgtatgtgttttgtgAAACCCGACGCGCGCGAATGACCCCGCCCCCCTCCCCTCTCCGTTTCCTCTCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224375 lncRNA downstream 113273 2280546 ~ 2280753 (-) True G189547
TU224340 lncRNA downstream 231455 2160630 ~ 2162571 (-) True G189521
TU224331 lncRNA downstream 247111 2146712 ~ 2146915 (-) True G189512
TU224263 lncRNA downstream 332761 2048830 ~ 2061265 (-) False G189451
TU224262 lncRNA downstream 344608 2048830 ~ 2049418 (-) True G189451
TU224592 lncRNA upstream 191761 2591237 ~ 2609773 (-) False smarcd2
TU224598 lncRNA upstream 203717 2603193 ~ 2604096 (-) True G189717
TU224599 lncRNA upstream 203717 2603193 ~ 2604043 (-) False G189717
TU224700 lncRNA upstream 255827 2655303 ~ 2655507 (-) True G189810
TU224750 lncRNA upstream 295304 2694780 ~ 2701420 (-) True G189855
XM_026947903.2 mRNA downstream 30741 2361824 ~ 2363285 (-) True LOC113547524
XM_034309128.1 mRNA downstream 48353 2335633 ~ 2345673 (-) False samd14
XM_034309127.1 mRNA downstream 48353 2335634 ~ 2345673 (-) True samd14
XM_034309549.1 mRNA downstream 59374 2308241 ~ 2334652 (-) True med24
XM_034309487.1 mRNA downstream 124971 2245794 ~ 2269055 (-) False LOC117598634
XM_026947813.2 mRNA upstream 184305 2583781 ~ 2590145 (-) False psmc5
XM_026947814.2 mRNA upstream 184305 2583781 ~ 2590089 (-) False psmc5
XM_034309573.1 mRNA upstream 184305 2583781 ~ 2589699 (-) False psmc5
XM_034309572.1 mRNA upstream 184305 2583781 ~ 2589689 (-) True psmc5
XM_034309571.1 mRNA upstream 191936 2591412 ~ 2600533 (-) True smarcd2
XR_003404831.2 other downstream 183047 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 822953 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 828766 1564890 ~ 1565260 (-) True G189180
TU224780 other upstream 393570 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 400600 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 452579 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2499298 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2500490 4899966 ~ 4900037 (-) True trnap-agg_2

Expression Profile