RNA id: TU224592


Basic Information

Item Value
RNA id TU224592
length 3044
lncRNA type read_through
GC content 0.38
exon number 3
gene id smarcd2
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2591237 ~ 2609773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ggactgcctgtgcaacctctgtagggtgcAGGTATCACttcatgctaccagtagtgacactgaccctagccaagtgcaaaagatgagtagggaaaaaaatgtcagtggcctccattcctgttttgggggtcgtgcacctgttgttaatttcattaacaccaaagcagctgaaattgattaacaaccccctctgctacttaactgaccagatcaatatcccaggagtttaattgacttgatgctatactctgattaaaaagtgttcctttaattttttgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtgtgtgtgtgtgtggggtggggaACAAGTTTCGAACAAGTTTCTAAGCCATAACTGccttgtttcttatttttgccAATGAGATAAAATGGAAGGTGGAGTTTTATACAGGTGTCTCTTATTTAGGAGACTTAACCCAAAAggtagtgtttacagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtCATCACTGTGCCAGACATAACAGTGAGAGAACACAGACGTGTGTTTATAAACAGCAGGTAGGAGTGTAAGCCATTTTTAAGTGATGTAAGATGGCCTTAAATGTAAAGAGGAAGTCCGAGTCCTGTTCTCCGGACGTTGATCCAAGATCAGATGACGTTCCAGATTTACTAATCCTGATCATTCCAATCAGAGAGCTGGATTTTGCCTCCGAGCTCCCTCGTAAGAGCGCTAGGTAGATCGAGACTTGAACCTTGATCAGCGATTGGATAAAGAGAACGGTACTGAAACCTGGAGAGgacatttaaaagttttttgggtttttttccttaTGCACAATCTTTTAGTTTCAATGTGGTACTAAACCAGAGTCAGGAAATCTGCTACTTTGTTTGAGCTTTGTTTGCTATGTCAAGTTTGAAATTAATACAATTGTTCCCAcattttggttcatttttgCTCGTCTAATAAAGTGTGCGTCTTCCGACAATGCTGTAGATGGCGGTGGAAATGCAGTGCCTCACCCACCgatgaacttttccacattacGTCGTGTTAAAACCTGGAAACgaaatggacttaattaggATTGTGtcataaatctacacaaaataatcataatattgAAGGGGGGTGGGACCAAAATAGTTTGCATAATATTCTACGATAAAAATTGTTGCCCTTTGTTTGGATTCATCCTCTTGCCCTCAGCCATGACCCGTTTCGCCGTCCCTGCTcatgaaaagcatccccacgacatgatgctaccaccaccatgcttcatggtgttctcagggtgatgagcagtgttgcaTTTCCTCACAAAATTGTTCGAAgtataggatttattttttatttttttaataaccaaacCCTTGATACGTTTCCAGAACGTTGTCCtggagctgttttggcagctcCTTGGTCGTTATGATGCTGTATATTTATGTGAAAAACTCCAGAAACcgtatttatattttcataggAGATCATAGGATATTTTAATTGCACACAAAGTTCCCCCATGACTCATTTAGGGGTTTTACAGCAAGCAAAAATTTTCACAACTTCACAAATCCATGACATATCATCCCAgataaatccatttcagttctacataatgtggaaaagttcaaaggaGGCAGGGGGTGAAAACTTACGCAGCACTGTGTATCTTACAAGCTAACGCTTTAATTAAAGACGTCCATCCATAGCGCAGACTTGAGCACTCCGTCTAAGCTGTATTCTCGTTCATATGAACCAAAGCGTGGAAATGATGAATGGAAGTTTATTAAGATTTACTGTTGTTTACGTTTAATACGCTTCTCCTGAGCAGGGTTGAGCTTACCAGCTTGTTGCCTTGGTAACAACAAGCGACGGCAGCGCTTCTCGCCAATATTAAAGCCATACTGCGTGTTTAGTTCAAGTGTATTTGCTCTGGTTTCAGCTTCTTACATTCCGTATATAAAAGTAGAAACGTTTCGACTCAGGAGGAGAGATGATCATATGAACATGGACACTTAAAGGGACGATCTGAGCTAAAATCAAATTTCCACATTTTCTTTAAACGCAAGTCGATCAGCTGAGACATGTTTCCTGAAATTTTCAGTCATTCGCGTCAtgcaaatgttaaatgttagtGATTtgggtgttttttattttgtttttttcttctagcAAATTCCCTGACGTTGAACTAGCAAACTATTTAGTTTATGTAGGTAATATTTATCTCCTCTAACTaaatatctagctagctagctagaataTGTTTATCTAGCTAGCAAGATATTtagctatttttatattcatctaGTCTAAAGGTACAAGGAGATGAAATAATCTACATAGCTATCTATATttagctaacacacacaaatagcgTACAACGACCCTTAATTAGCTTATTGAATTTAGTTGGTACTTGTTTCCAAACTATAGACAAAGTAGTCACGTAAACcacaaatatgtaataaatatgtagCGCAAGCGCCATGTACGCTTGTAGTTTATCTCTTGTGGCCATGTCCGACCGCTGTCGTCGTTGTTTGTGGGTGTGGGTCCAGTGTCTTTTTATTTCGTTCCAATGAGAAATCTTAGTAGCTATAGATAGCTGCTAAAGCTAACTAATTAGTTACACATTCTGGCTGATCGCTGACGTTTGAGCTGCgtggaaaatgtgtgtaaatttgaaatttgCCCAGAACGATCCCTATAATTTCATAAcagctattattattgttattattaataacagttgtttgttttacaaGTATTTTTAAACTCTGGCCTGTGACTTTATTACAGTTAGTATAACTTCCTGTATTAAACGTGCCATTGTTTTTAAGATGATGTActcagatgattttttttttttttttttttttttttttaacctgttgaatgaaaaaattttgatttttataTGGCAAAAAGAGCATGTTCTATTTTGTAGGTTTTGACTTGTGATCTGtgctttttatactttttaaagctctcttttgtattatttttttttcttttgtacaaTAAAATGTTCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224575 lncRNA downstream 191761 2394026 ~ 2399476 (-) True G189702
TU224375 lncRNA downstream 310484 2280546 ~ 2280753 (-) True G189547
TU224340 lncRNA downstream 428666 2160630 ~ 2162571 (-) True G189521
TU224331 lncRNA downstream 444322 2146712 ~ 2146915 (-) True G189512
TU224263 lncRNA downstream 529972 2048830 ~ 2061265 (-) False G189451
TU224700 lncRNA upstream 45530 2655303 ~ 2655507 (-) True G189810
TU224750 lncRNA upstream 85007 2694780 ~ 2701420 (-) True G189855
TU224782 lncRNA upstream 183054 2792827 ~ 2802964 (-) True G189885
TU224779 lncRNA upstream 186734 2796507 ~ 2827807 (-) True G189882
TU224787 lncRNA upstream 188467 2798240 ~ 2798669 (-) False LOC113547504
XM_026947813.2 mRNA downstream 1092 2583781 ~ 2590145 (-) False psmc5
XM_026947814.2 mRNA downstream 1148 2583781 ~ 2590089 (-) False psmc5
XM_034309573.1 mRNA downstream 1538 2583781 ~ 2589699 (-) False psmc5
XM_034309572.1 mRNA downstream 1548 2583781 ~ 2589689 (-) True psmc5
XM_026947903.2 mRNA downstream 227952 2361824 ~ 2363285 (-) True LOC113547524
XM_026947875.2 mRNA upstream 8616 2618389 ~ 2638273 (-) True slc4a1b
XM_026947878.2 mRNA upstream 122443 2732216 ~ 2745395 (-) True LOC113547505
XM_034309629.1 mRNA upstream 176308 2786081 ~ 2811391 (-) True LOC113547504
XM_034309351.1 mRNA upstream 203593 2813366 ~ 2827752 (-) True LOC117598559
XM_026947900.2 mRNA upstream 242282 2852055 ~ 2855362 (-) False ndufa4
XR_003404831.2 other downstream 380258 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1020164 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 1025977 1564890 ~ 1565260 (-) True G189180
TU224780 other upstream 183273 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other upstream 190303 2800076 ~ 2805906 (-) False LOC113547504
TU224811 other upstream 242282 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2289001 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2290193 4899966 ~ 4900037 (-) True trnap-agg_2

Expression Profile