RNA id: TU224780



Basic Information


Item Value
RNA id TU224780
length 615
RNA type TUCP
GC content 0.47
exon number 4
gene id LOC117598559
representative False

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2793046 ~ 2827752 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


CAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCAACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCATATATCGATGCTGAACTACCCAGCCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGGATGTTCCCTTATGCTTATTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCACTTGAATATGTTCCATTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGGACCATTCCTTCTATTCCCTCCCCTCACTGGCTGGCTGGCTATGGCATGGAGAACAGCAGTTTCGTTACCATTCCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU224750 lncRNA downstream 91626 2694780 ~ 2701420 (-) True G189855
TU224700 lncRNA downstream 137539 2655303 ~ 2655507 (-) True G189810
TU224592 lncRNA downstream 183273 2591237 ~ 2609773 (-) False smarcd2
TU224598 lncRNA downstream 188950 2603193 ~ 2604096 (-) True G189717
TU224599 lncRNA downstream 189003 2603193 ~ 2604043 (-) False G189717
TU224982 lncRNA upstream 96432 2911012 ~ 2911255 (-) True G190048
TU225014 lncRNA upstream 262451 3077031 ~ 3077290 (-) True G190076
TU225033 lncRNA upstream 341331 3155911 ~ 3156150 (-) True G190094
TU225036 lncRNA upstream 356303 3170883 ~ 3171571 (-) True G190097
TU225038 lncRNA upstream 358480 3173060 ~ 3173967 (-) True G190099
XM_026947878.2 mRNA downstream 47651 2732216 ~ 2745395 (-) True LOC113547505
XM_026947875.2 mRNA downstream 154773 2618389 ~ 2638273 (-) True slc4a1b
XM_034309575.1 mRNA downstream 177280 2606033 ~ 2615766 (-) False si:dkeyp-118b1.2
XM_034309574.1 mRNA downstream 177281 2606033 ~ 2615765 (-) True si:dkeyp-118b1.2
XM_034309577.1 mRNA downstream 177286 2606033 ~ 2615760 (-) False si:dkeyp-118b1.2
XM_026947900.2 mRNA upstream 37475 2852055 ~ 2855362 (-) False ndufa4
XM_026947848.2 mRNA upstream 41656 2856236 ~ 2864989 (-) True rundc3ab
XM_026947845.2 mRNA upstream 59936 2874516 ~ 2896348 (-) True pth3r
XM_026947856.2 mRNA upstream 110015 2924595 ~ 2952904 (-) True erbb2
XM_026947911.2 mRNA upstream 142859 2957439 ~ 2967729 (-) True pgap3
XR_003404831.2 other downstream 582067 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1221973 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 1227786 1564890 ~ 1565260 (-) True G189180
TU224811 other upstream 37475 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2084194 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2085386 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 2086556 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 2087748 4902328 ~ 4902399 (-) True trnap-ugg_4

Expression Profile