RNA id: XM_034309629.1


Basic Information

Item Value
RNA id XM_034309629.1
length 3844
RNA type mRNA
GC content 0.46
exon number 30
gene id LOC113547504
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2786081 ~ 2811391 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATTAACAACAACAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCTACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTTGATGACGAAGTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTAACCAAGAAATTAACAGGATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGATCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGTACAGCAGTTTTGTCACCATTCCAGTAAACTATCCCTCTGAGCTGTCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATCAACAACAATATTTCCAACAGaTCCATTAACAACAACAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCTACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTCGATGACGAAGTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGGATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGTGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGAACAGCAGTTTCGTCACCATTCCAGTAAACTATTCCTCTGAGCTATCTTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATCCATTAACAACAACAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCTACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATctgaGTATGGATGGTTATGTGGCTTTCTTCGTCCCAAATGTCGATGATGAAGTACCCAACCGATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTGACCAAGAAATTAACAGAATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCAGTTGAATATGCTTCTTTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGTCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCCCTTACTGGCTGGCTGGCTATGGCATGGAGTACAGCAGTTTTGTCACCATTCCAGTAAACTATCCCTCTGAGCTGTCGTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagATACATCAACAACAATATTTCCAACAGATCCATTAACAACAGCAGCTCCACCAGGTTCATCTTTGTTTCAAGTGGGACCTGGAGCGACACAACTTTACCTGAGTGATGGACAATATCAAACCATTCAGCTGCAGCAAGCGTTCAAGTACGCTGGAAAAACATACTATCAGCTCTATCTGAGTATGGATGGTTATGTGGCTTTCTTCGTCCCATATATCGATGCTGAACTACCCAACCAATATCTAGGCAAAGACATCATTGCTCCACTGTGGACTGATCTGGATGCTGACCAAGGAGGAAGATGGACCTACGAGCAGGCCACAAGCGGGCCTCTTATAGCTCAAGCTAACCAAGAAATTAACAGGATGTTCCCTTATGCTTACTTTTCTGCTTCCTGGGTCTTTGTCTCCACTTGGGAAAATGTACCACTTGAATATGTTCCATTCCAGGGCGCATCACTTCAAGTCGTCTTGGCCTCGGATGGTGGAGGCCGCTCTTTCGTCCTGATGAACTATGGAACCATTCCTTCTATTTACTCCTCTTACTGGCTGGCTGGCTATGGCATGGAGAACAGCAGTTTTGTCACCATTCCAGTAAGCGATTCCTCTGAACTGTCGTCATCTAGTAACGTCAATATCCCTGGACGCTGGGCTTTTCAATTTACagCTACAACTCCAAGTCCAACAACAACACTAGCACCCTGTCAGATCCTGAACTGTGCTTGGGATGAAGTCTGTAGGCAGATAAATGGAGCGTATGGCTGCGCCTGTGGGTACATTCCAACGCCCAGCCCGAATGCTTATGatgCCACTGAAACCTGTTCAGGCAGTACTGgatcactgtctctgtctcgctGTCAGCTCTTTGAAGCTGGATTTTCTGCAGATGTTCTCCACCTCAATGACCCAAACTGCAAAGGGGTGGTCCAAAATAACAGGCTGGTGTTCAACTTTGACAGTAATGCCAACATGTGTGGCACAACTCTGGAGAATAACGccacacacatcatcttcaaGAACAACGTTGGGACGACTGACGGGATAGGTGTGATCAGTCGCACTGGTGGGCTCAACATTGCCTTTTCCTGTGTGTATCCACTCGTCCAGAGCATCTCCATGCGCACGGCCATCCAAGCCACAGGAAGTGTAATCAGCAAGGATCTGTCTACTGAGGGCTCGTACCAGATCAGCATGATCCCTTATACTGATGATACATTCCTGGTTCCATTCTTTGGCAATGTGACCCTAGAAGTGAACCATCAGATGTATATAGCCGTGCAAGTGGATCGATTTGATAGCTCTCAGATCGCTCTTGTGCTAGACAGCTGCTGGGCCACACCTGTCAACCAGACTGACTATTCCATCCGCTGGGACCTGATCATTAATGAGTGTCCAAACCCCGCTGATGGCACAGTGCAAGTGTTGCAGAACGGCGTCTCCACATCCAGCCACTTCTCATTCAGGATGTTCACATTCACTGGCTTCTCTACCAAGGTCTACCTGCACTGCCAGGTCCATCTCTGTCTGCTGGAGAAAGGCAACTGTGCACTGCCATGCACTGGAGGACATTCCAGAAGACGGAGATCTGTAGATTTCTATGACTCAGCTGGCATTACCATGGcattctgatttgttttttcttgaaCCTTAGTgctgtcatttcatttttatctttgttctatgtttaatcataatcattaagtattgctttaataataaatgcaaatatcaTCAAAATTACACTATTATCCATAAAACTTTGTGATTGTATCCATCTGTACCTTAATACTTCATAATAAAGCTTTCaagcattttattctttttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224750 lncRNA downstream 84661 2694780 ~ 2701420 (-) True G189855
TU224700 lncRNA downstream 130574 2655303 ~ 2655507 (-) True G189810
TU224592 lncRNA downstream 176308 2591237 ~ 2609773 (-) False smarcd2
TU224982 lncRNA upstream 99621 2911012 ~ 2911255 (-) True G190048
TU225014 lncRNA upstream 265640 3077031 ~ 3077290 (-) True G190076
TU225033 lncRNA upstream 344520 3155911 ~ 3156150 (-) True G190094
TU225036 lncRNA upstream 359492 3170883 ~ 3171571 (-) True G190097
TU225038 lncRNA upstream 361669 3173060 ~ 3173967 (-) True G190099
XM_026947878.2 mRNA downstream 40686 2732216 ~ 2745395 (-) True LOC113547505
XM_026947875.2 mRNA downstream 147808 2618389 ~ 2638273 (-) True slc4a1b
XM_034309575.1 mRNA downstream 170315 2606033 ~ 2615766 (-) False si:dkeyp-118b1.2
XM_034309351.1 mRNA upstream 1975 2813366 ~ 2827752 (-) True LOC117598559
XM_026947900.2 mRNA upstream 40664 2852055 ~ 2855362 (-) False ndufa4
XM_026947848.2 mRNA upstream 44845 2856236 ~ 2864989 (-) True rundc3ab
XM_026947845.2 mRNA upstream 63125 2874516 ~ 2896348 (-) True pth3r
XM_026947856.2 mRNA upstream 113204 2924595 ~ 2952904 (-) True erbb2
XR_003404831.2 other downstream 575102 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1215008 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 1220821 1564890 ~ 1565260 (-) True G189180
TU224811 other upstream 40664 2852055 ~ 2855493 (-) True ndufa4
trnap-cgg_2 other upstream 2087383 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2088575 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 2089745 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 2090937 4902328 ~ 4902399 (-) True trnap-ugg_4

Expression Profile