RNA id: XM_026947900.2


Basic Information

Item Value
RNA id XM_026947900.2
length 741
RNA type mRNA
GC content 0.40
exon number 4
gene id ndufa4
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2852055 ~ 2855493 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTCCCGATTCCCGTGGCAACGTACCGGAGAGAGCACGCGCGCGCATCGCAGTGCTGAAGACATCTTTTAGTGTTAGTATACAGGCGATTTCTGTCTATATTTTTCGCAAAAAATCAGACAGGATGCTAAAACTTGTGGCAAAACAGCTGAGGAGCCACCCGGCTttgatccCTCTGTTTGTATTCATCGGTGGTGGAGCAACCATGTCAATGCTCTATCTCTGCCGCCTGGCCCTTAAGAACCCGGAATGCTCGTGGGATCGCACCAATAACCCTGAACCCTGGAACAAGCTCGGCCCTAACGACCAATacaagCTCTTCACGGTGAACATGGACTACTCCAAGCTGAAGAAGGACAGGCCTGACTTCTAAACCTGTCCCGGATTTATATAAATGGCACAGTATGAAATCCAAGAGCTGATGAGCATTGCCATTTctgagaaaggaaaggaagcaTTCATGATGCTTCCATACACTTTGTACACATTCATACAGAAACACTTGTTTTGTACTTTATaggaattaatttaaaaaagtatttatgaTTCTTAACCAGAAATGGTTCAGTcaggaaatatataaaatatgtatgatTTTTAGAATTGTGGAAAATCACAGAAaagttatattaaaatgaaattgttttcccaaaatgatttcttttcagTTTGTATTAGCCAGGCTTACATACGTCTCTATCTCTTAAATAAcaccagaaataataaaaaaaattgattcagA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006810 transport biological_process
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224779 lncRNA downstream 24248 2796507 ~ 2827807 (-) True G189882
TU224786 lncRNA downstream 42136 2806601 ~ 2809919 (-) False LOC113547504
TU224782 lncRNA downstream 49091 2792827 ~ 2802964 (-) True G189885
TU224787 lncRNA downstream 53386 2798240 ~ 2798669 (-) False LOC113547504
TU224750 lncRNA downstream 150635 2694780 ~ 2701420 (-) True G189855
TU224982 lncRNA upstream 55650 2911012 ~ 2911255 (-) True G190048
TU225014 lncRNA upstream 221669 3077031 ~ 3077290 (-) True G190076
TU225033 lncRNA upstream 300549 3155911 ~ 3156150 (-) True G190094
TU225036 lncRNA upstream 315521 3170883 ~ 3171571 (-) True G190097
TU225038 lncRNA upstream 317698 3173060 ~ 3173967 (-) True G190099
XM_034309351.1 mRNA downstream 24303 2813366 ~ 2827752 (-) True LOC117598559
XM_034309629.1 mRNA downstream 40664 2786081 ~ 2811391 (-) True LOC113547504
XM_026947878.2 mRNA downstream 106660 2732216 ~ 2745395 (-) True LOC113547505
XM_026947875.2 mRNA downstream 213782 2618389 ~ 2638273 (-) True slc4a1b
XM_034309577.1 mRNA downstream 236295 2606033 ~ 2615760 (-) False si:dkeyp-118b1.2
XM_026947848.2 mRNA upstream 874 2856236 ~ 2864989 (-) True rundc3ab
XM_026947845.2 mRNA upstream 19154 2874516 ~ 2896348 (-) True pth3r
XM_026947856.2 mRNA upstream 69233 2924595 ~ 2952904 (-) True erbb2
XM_026947911.2 mRNA upstream 102077 2957439 ~ 2967729 (-) True pgap3
XM_026947919.2 mRNA upstream 115968 2971330 ~ 2975144 (-) True mylpfb
TU224780 other downstream 37475 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 46149 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 641076 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1280982 1568286 ~ 1571073 (-) True G189199
TU223922 other downstream 1286795 1564890 ~ 1565260 (-) True G189180
trnap-cgg_2 other upstream 2043412 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 2044604 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 2045774 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 2046966 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 2048259 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile