RNA id: TU224860


Basic Information

Item Value
RNA id TU224860
length 4039
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G189953
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 2955050 ~ 2959154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCACACCAGTGaagggagaagagagaaagaaaaagagagagagggatggacgtgcacatggcaaaaaaaaacccaaaacaaaacatggtgcCTTCAAGCTTCCTTACTGGCTGGTGGACTTGTTGGGACACTCAAGTTGTAACTCggcattttaatattaaacccCTTTTTTCTACTCATCCAAAATCACAGAAGAACCTCACTCATGCTCCACATCTTGGTCAATCCAGAAGCAACTCAAATAAATGAGCTCAGTATATATCTAAATCCCTTAGATCAGCCAAGAAGAGTTAGCTAGTGGTAATGGTATGAGGCTAATCTAAGCTAATATAACAAAATGATCTAAGCGAGCCTGGATTAATCTAGAAAAGATAGCTAAAACTGCATAGATCTGAGCAATAGATCTAGACCAATGCTAATAATCCAGAATTGTTAGCTATAGCTAAATTTAAGATCAACATAGATTGGATTTGGTGTGGATTTGGTGGGGAGCTCTAGATTGATCTAGAAGCACTGAGTAGATCAGTCCAGATCTGTACAAATATCTGGATTAACTGAGAAAAGCCAACTTCCACTTCCATTAATCTGCCAACATACAGTAGATTAGCGCAGTGGTAgctcatgagttcaaatcccagcaccaccaacctgcccttgagcaaggccctttaCCCTCATCTGCTcaaatgtataaatgagatgaatgtaagtcactctggataagggcatctgccaaatgccataaatgatgtaaatgtagatTAGCTCAATCTTCTGGATTGATCATCAAGCTGAATTGAAATGTGGCTAAATTTTCTAGAACGTTCTAGAAAAGCTACCTACACCAACACAAATCGAGCTCGAAAGATTTCTGTAGACTGATCTAGCCAGATCTGTCTAACTTGATCTAGAGAGGCTAATTTGAATCTAGAAGAGCTAGCCGCTAGCTGGAGCTAGCTATTGATCTGTTCTGATCAATAGTAGCTAGTAATCAAATTTGTGAGTAGAAAAAAGGGGTTTTAAAAGGTACATTTTGTAATATCTAAGTAGTACAGTGTGATCTGTTGGGTTGGTTAGTGACAAATATTTGTGTAACCAAGAGCAATATCAaattattgggaaaaaaaatgtatcatacCTTTAATTAACAATGATTATTTTAACCTTCATTTTATCTAGAAGCCATCGATTGCAGCTTGGTATTACAGAATGATTGACAAAcaaggtgaaaaaaataaataaatacactttaaatCTTAAAGTTTCACGTTGACCATGCCCGATCCTCTCCAACACAGTGCGTATAGCATAGGGCTCTAAGGTCTGAGTGATGAGAACTAACAAGTGTTTTTATCCAATGTTAACAACCATTTAACTCCTTCGCTACTCGTTATTTAAAACTATTCAAATCTATTGGTTGATTCgtataaaaaaaacctcaaacatACGTAAGGCTTCACATTAATCCAAATGATGTAGTCGATCAGCCgagacatgtttggtgtgtgaagtTTTCATCtatggagctacaaggctagctacattagctaggCTCTGAATAAATCTAACCCTAGCTACATCATCGACCAATGGATCGACCAATAAACCAGAAGAGCTGGCTCAATTCGTTTAGATTGATCTAGAAAAACTACGAGCATTTTCCAGATCAGTCTAGTACACCAGCATGATTAGTGGGAGTCAATctcagcctcagttcttcaaCCTTGTGAAGCTCAAACTGGAACGTTATTTATGGAGGAAGCCATTTTGTAAGTGCACGTCACCTCTAGGCCCCGCCTCCCAAAGTATGAAGGTGGAACTTAAATGCGTGAACATGGACTAATACTGTCATTTAACACaattgttcattaaaaaaaaaaaacgacactACGGAGCTTAACGATGTCGTCTGAAGCAAGCACATGAACATTTAGGAATGGatttagaaaaattatttttgggtGAGATACGTTTGCATTATCATTAGTAGATGTGCAAAGGCTAAAACAAAGCACTTAACACGTCTTGGCTGATCGACGTCGTTtggtgaaacaaaaaaaaaacgttgtgtgtataaaacatttttttccattcctCTATGGTTGTGTTTTTGCTGGAATAAAAACCTGGTCGActcctctcagtgtttcagcgTTCTCATGGTGACTGTTATGAACACACTCCGAGCCCCTCCGCTCCAAAATATCTAAGGCTATATTTACCCGCCAGCTGAAcatgctcactctctctcactcacacacacacacacacacaaaagtgcaCAAGTGGCAATTTGGAACAAAGACACGTTGACACCGGTGTTAATCCTCCAGGGAGCAAATAAGCACTCACATCGTTCAATGGAAATGGAGTTTCAGTGAAGACAACAGACATAACTGTATACTGGACAAGATGGAATAAGGCAtaagtggaacacacacacacacacacacacacacacagtttcaaactcttccattttttcCTCTCAAGGCATTCCAGGTGAAAAACATGCTTCAGATTACTTCCTGAAtggaaaacaataataaaaatgtaagaaaaaaacactttgtggttaaaaaaaaaaatgaacacaacagtataaaagaagcaaacacagcagcagtgaaaagaaaaaaataaaaggcaaagcaaacATTACAGCTGCTCCAACATATCATTTGTGAGTCGTATCATGATAttatcagccttttttttttttgatacccTTCAATATCCCTAAATACTGCGCTCATACTGATCAATACGTAAATGTGCAATATGTAAATGAGCACAATAAACAATCACAGGCCTTCACACACCCTCAATCAAGAGTCGGACGTCTTGTTCAAACACTCGCAAATCTAAAATGGCTATCTCTTGTCCACACGTAATTCAACAATATTAGCATTTacattcttgtatttttttggAAGGTGCTTCAACTAgcatccagaaaaaaaaacgaacaaTTTTTTCTGCTTGCTACAAACTCGGACAAAACGTTACATCGCTACTGCACTAAAATACGTGTCAAAACAGTATGTTATTGATGTTAACGTTCTATTTTGACGTGTTTACGCAGTTTAGGACATTGGCCAAAATGTTGGGCCAACTCGCTGGTGCGATAATGATTTCCCTCTGCTGGTGGGCACTGGTATTACACCACGAGGCACCTTACGAAAATTTACGGTAATTCTAGATCTTAGCAGCACCCATGCTAAGGCCTctctgaataaaatgaaattattctaTAAATTGTGAGATTTCTGTACGGATATTGAAGAGCGCAGGTGGTGTGTCACCTAGCCATTTCATTAGtttctcaaaaaacaaaaatttactAAGGAACATGTCTTTAGCTATCTAGCACCCCAAAATAAATGACGAAACAGTACATCATCAGACCTGCCAGTCGCGAAGAAGACTAACGCGTGATCCCGCCAGCGGTCAGGGGAGGGGTAAAAACGCAGAACATCTTCGATATTGTCCTTTCGCAAATCACTTGTCAATACAAGGCTACCAGGGGGCGTCAGTTAATATCGTAAAGTTCAAACCATCtacgcaactgtcaatcatttcagAATCATATGTCGATTGGAatcatctgccatttttatcagaggaaaaaagaagactgctcttttgccGTATTTTTAGTGATAACTCATAGCAGTGTACTCCACGTTAAAATGCGGAGCTCCTACGCAAAAAAGacgtaaaggttggcaggtctgaacCATGAGCAGTGGGATATGCTGGAACATTATACATCAAATTGCGATATACCATGTTAAGGTAAAAGTGTTCTGATGTACtatttatagtatagtatatggTTTGGGATGCAGGCGAACACTAGCATGGATTTCAAAACCATATCCCTCTGCTGGTGGATGGCGGCATGCAGGCGCAAGTATTGCTGTAACGCTAATCTTAACATTGAAAATATTAGCAAACGTTAGTGCccttcatcctctctctcttttttttttttttttgcaattttgtcTCAAATGATGTCAGTGTAAGTTATg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU224857 lncRNA upstream 2195 2952590 ~ 2952855 (+) True G189952
TU224851 lncRNA upstream 13220 2941230 ~ 2941830 (+) True G189946
TU224846 lncRNA upstream 19650 2934355 ~ 2935400 (+) True G189941
TU224845 lncRNA upstream 23670 2930933 ~ 2931380 (+) True G189940
TU224839 lncRNA upstream 26881 2927801 ~ 2928169 (+) True G189934
TU224862 lncRNA downstream 697 2959851 ~ 2960052 (+) True G189954
TU224867 lncRNA downstream 7809 2966963 ~ 2967611 (+) True G189959
TU224868 lncRNA downstream 9918 2969072 ~ 2970088 (+) True G189960
TU224819 lncRNA downstream 10971 2970125 ~ 2975485 (+) True LOC113547538
TU224821 lncRNA downstream 10971 2970125 ~ 2975485 (+) False LOC113547538
XM_026947842.2 mRNA upstream 31702 2906154 ~ 2923348 (+) True LOC113547478
XM_034309597.1 mRNA upstream 31702 2906154 ~ 2923348 (+) False LOC113547478
XM_034309596.1 mRNA upstream 31702 2906154 ~ 2923348 (+) False LOC113547478
XM_034309598.1 mRNA upstream 32587 2906154 ~ 2922463 (+) False LOC113547478
XM_034309599.1 mRNA upstream 32587 2906154 ~ 2922463 (+) False LOC113547478
XM_026947841.2 mRNA downstream 117939 3077093 ~ 3082950 (+) True LOC113547477
XM_026947827.2 mRNA downstream 134850 3094004 ~ 3099985 (+) True LOC113547472
XM_026947828.2 mRNA downstream 134852 3094006 ~ 3099985 (+) False LOC113547472
XM_026947847.2 mRNA downstream 141050 3100204 ~ 3107200 (+) True mto1
XM_026947901.2 mRNA downstream 159340 3118494 ~ 3126524 (+) True LOC113547522
TU224759 other upstream 194040 2760693 ~ 2761010 (+) True G189864
TU223925 other upstream 1289713 1663092 ~ 1665337 (+) False LOC117598477
XR_003403557.2 other upstream 2734682 137521 ~ 220368 (+) False ccser2b
TU224820 other downstream 10971 2970125 ~ 2989928 (+) False LOC113547538
TU224822 other downstream 10971 2970125 ~ 3021609 (+) False LOC113547538
TU224959 other downstream 279290 3238444 ~ 3239216 (+) True G190028
TU225191 other downstream 442113 3401267 ~ 3405009 (+) True G190212
TU225438 other downstream 822977 3782131 ~ 3782495 (+) False rasd1

Expression Profile