RNA id: TU225044


Basic Information

Item Value
RNA id TU225044
length 1559
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G190100
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3174077 ~ 3175635 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCAGCTGTTTTATTGAAAGtaacatattcatattatttacaatagaaattaaaacaaaagctaCATTTGCTCAATTtgttctttccatttctttcctttgGCACCCAAAAAATCCAGGTAATTGACTTCTCTCTTAATAACGAGGTTATTAAACAGTTAAGCaaagcagagtttttttttgtttaaatcacCTGGTGACTGACTGAAGGGGAAAATGCTAAATTTATTCCTTGTTTGTTTCAATAATTCCAATGACTTGTGTTATTGTGACACAAAAGAAAGTCTATGAATAAATCAAAACTGCGAGACCAATATACCGATGTATCAGTCCAGCACTTGGGATCATTTGACCACATTGGGCATTAAAGGCACGTTTCTTCTAGCTGTTATAAGGATGAAATATCTATGTTTAAACACATTATTGAGGCGTTTATGGTGTTAAATTTCATGTTGGATGCCCTGTGAGTTTCTCTCCATCAGTCttcatcagagctgctgttttcctCGGCGTCAGAGAGATCAGCGATGGGGAAGCGCAAGATGGCTGCCACGCCGCTGAGCTGATTTAGTTCTGtaaaagacagggagagaacaTGAGGTTATTGGAGTTTTTAGCCAATGGAAGGTGTGGAAAAGTGATAAACTTACGTTCTCCGGAGACGTGCAAGCTTGAAAATATCCTTCAGAAAAGacgagaaaataaaaaatataaataagttaGCAGTAGACAATTTACAAAAATTAgatatacacaaacatacacaaagtATTCAGACCAAACTACTATATTTCAGTTTGTTGGTTGGAgagatacatttttttatccattaaaagTGAACCTGTAACAtaaactgaggaaaaaaaataaaaagggatgaatacaatacaaaaaaaatactactcAACATActttagaaaaaatataaacatgtttacatATCACCATAGCTTTCGTAATGTAGACCGGGTCAGAAACGCAATCACGAAATCAACTCTCCGCATACtgtgtaaccatggcaacaaatAATGGGTTTCCTGGTTTCCACATTCGCTATCATGTCGGTTGATGAAAACGTGTAATTATGATATTACCATAATTAATTGAATTACAGTGCTGCACTGAAGGAGTGGGTTCATCAAAAGCGACAAGAACAGAGTGAGATGAAAAGACGTAGCCATAGCAACAATCGTATAATGTAGTCTATTGATATTGATATGTTAGAAAAAAGTTGCCTACACATCTGACcgcaaaatgtatttttttttttttttttttacctgactGTTCCTCCGTTGTCCCTCACGTTATCCACAAGCCGGACGTATCGGCTCCGAGTAGCTACTTCTTGATGTCTAACACAAAGACCACATAAATGAAaacagtgatgacatcatggCAGCAAAACAGAATGCTTCAGTTAAACCATGTACGGACATTTTCCAAGCTAACAGTAGCCATGCTAATATAACAGAAATGCTAACGTGTGTGTCACCTGAACAGTTTGTCGCTGATCAACAGGATGTCGACGGCTAACGCTTCGCTTGCTTTTTCCACGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225038 lncRNA downstream 110 3173060 ~ 3173967 (-) True G190099
TU225036 lncRNA downstream 2506 3170883 ~ 3171571 (-) True G190097
TU225033 lncRNA downstream 17927 3155911 ~ 3156150 (-) True G190094
TU225014 lncRNA downstream 96787 3077031 ~ 3077290 (-) True G190076
TU224982 lncRNA downstream 262822 2911012 ~ 2911255 (-) True G190048
TU225167 lncRNA upstream 173739 3349374 ~ 3349729 (-) True G190188
TU225215 lncRNA upstream 251801 3427436 ~ 3427644 (-) True G190232
TU225293 lncRNA upstream 321494 3497129 ~ 3497399 (-) True G190304
XR_004579133.1 lncRNA upstream 360030 3535665 ~ 3536422 (-) True LOC117598465
TU225326 lncRNA upstream 439785 3615420 ~ 3632422 (-) True G190336
XM_026947876.2 mRNA downstream 6286 3159988 ~ 3167791 (-) True ppp1cab
XM_034309530.1 mRNA downstream 22621 3137134 ~ 3151456 (-) False atp2a1l
XM_026947883.2 mRNA downstream 22622 3137134 ~ 3151455 (-) True atp2a1l
XM_026947881.2 mRNA downstream 56013 3107185 ~ 3118064 (-) True LOC113547508
XM_026947853.2 mRNA downstream 105936 3033048 ~ 3068141 (-) True LOC113547488
XM_026947914.2 mRNA upstream 1269 3176904 ~ 3180468 (-) False LOC113547533
XM_026947913.2 mRNA upstream 1269 3176904 ~ 3180468 (-) False LOC113547533
XM_026947912.2 mRNA upstream 1269 3176904 ~ 3180468 (-) True LOC113547533
XM_034309015.1 mRNA upstream 7435 3183070 ~ 3205679 (-) False cmn
XM_034309018.1 mRNA upstream 7435 3183070 ~ 3205679 (-) False cmn
TU224811 other downstream 318584 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 359497 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 368171 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 963098 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1603004 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1723139 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1724331 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1725501 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1726693 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1727986 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile