RNA id: TU225191


Basic Information

Item Value
RNA id TU225191
length 1559
RNA type TUCP
GC content 0.34
exon number 4
gene id G190212
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3401267 ~ 3405009 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTGGAGAAGACGATCCTCGAGACAGTGACAGTTAATTTTTCAAACAGAGGAGTCCGCCATTTCTGCCCGTTCCCTCAGATTGTGTTGGACCTGGAAGTAATGGCTGAGGATGAGACAGGTTTCCGGGAACACATTAATGCCATCACCCTGGAGTTGCGTAAAAGCAACCCCAGTTACTCTGAGGTCAAGAAGCGGATGAAGAGCACTCTTTTCCAAAGAGTACAGATTATGGAGAGGCCTGCAGCTGAAGTAATGGAGCAGTTTCCTTTTCTTGGAGTGCCACAGCTTaTGCTGCATGAAATGACAATGAGGTTTGGAACAGACTTGGCGAAGAACATGGAAACATCTCTAAATGAAATGGCCCCAAACACCATCAGGAGTTCAAAAGGAggaagtcaaaaaaaaaaactctacgCCAATCTCATTGGACCAGCAGAGGAACCCAAAGCTTCTACACCAACCATAGTGTTCAACTGTAGAGTTTTGTTCTCCTGATCTAACACACTATCATGCTCATTTTATCCTCATCAGCAGTGTGTTAATAAGCTGATCAATTTGAATCAGTGTGTTAGAGCATTTGTCATGTCTTCTACAATTTAATACTACATAATCAAATTTATatttggaaataataataataataataataataataataataataataataataataaaacagacagcattcctgaataaaaataaacacattaacattaatctaataaaactgctttataaataacaaaagtacacatttattaaaacaaatgatgtACATGTGTtaagtatatagtatatttataataatgttagaTATTTTGCTTATTGTCAGCCTGGACTAACAGCGATTTACAAATGTACTATAAGACAAACGCTGGCACAACGATTATATTGCATACATGTTCATATTGGTCGTATTTGGTGGTGAAGCTGTTAAAAGTGATAGGAGACTGTCATCTGGTGGTAGACCGATTCCACTGCATGGTGAATTGTGGAAAATCacaggtgaaaataaatgaaactgaaactgtgaaaatgaatgactcatgaaaaaaaacacataaaataaaaatacaagcacCACATTTCTGAAACATAAcatgtgaagtgtgtaaaaaccaataaaatgtgaatttcatgtgacttttctgtaaaggTGTCGAATATATCTGGAAAAATATGTTTCCAATGATTCTTTTCCCTGGTTCATACCTTTAGTTTTGTGATTCAAGCCATAaagtttcttcattttcagtgtattttaaatttctaaTACAGATTTTGTTAATCATAGTAATGACCTTGTGTATGAGTTACAGACCACTTAGGAATACAGGAAAAGgaaaacttttcatttaaaacgTTGCACTTTGTTTTACAATGTCATAAAAGTGTTCAAATATCAACTTAGATCTGGTTGGAAGCAATAAGGACAGATCTAGTGTAATCTAGACAGCTAGAAATCACACTATTGTAAGATCAAGCAACaagatttaaaatttttgaaCTTATTCAACTTGACTAAGGttacttttaatattaacaatgtGGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225147 lncRNA upstream 33974 3367094 ~ 3367293 (+) True G190170
TU225137 lncRNA upstream 48347 3352658 ~ 3352920 (+) True G190160
TU225095 lncRNA upstream 135557 3265501 ~ 3265710 (+) True G190122
TU224964 lncRNA upstream 166657 3234389 ~ 3234610 (+) True G190033
TU224958 lncRNA upstream 178958 3221937 ~ 3222309 (+) True G190027
TU225208 lncRNA downstream 25304 3430313 ~ 3432405 (+) False LOC113547484
XR_004579240.1 lncRNA downstream 72061 3477070 ~ 3482359 (+) True LOC117598604
TU225244 lncRNA downstream 72062 3477071 ~ 3477663 (+) True G190258
XR_004579242.1 lncRNA downstream 72138 3477147 ~ 3477778 (+) True LOC117598607
TU225266 lncRNA downstream 103016 3508025 ~ 3508227 (+) True G190277
XM_026947915.2 mRNA upstream 136045 3261534 ~ 3265222 (+) True LOC113547534
XM_026947880.2 mRNA upstream 147465 3251702 ~ 3253802 (+) True LOC113547507
XM_026947879.2 mRNA upstream 152043 3244122 ~ 3249224 (+) True pkmyt1
XM_026947840.2 mRNA upstream 225615 3169668 ~ 3175652 (+) True pelo
XM_026947819.2 mRNA upstream 265101 3129716 ~ 3136166 (+) True sult1st6
XM_026947858.2 mRNA downstream 11195 3416204 ~ 3417931 (+) True LOC113547491
XM_034309054.1 mRNA downstream 25430 3430439 ~ 3453426 (+) True LOC113547484
XM_034309053.1 mRNA downstream 29547 3434556 ~ 3453426 (+) False LOC113547484
XM_034309055.1 mRNA downstream 29556 3434565 ~ 3453426 (+) False LOC113547484
XM_034309408.1 mRNA downstream 262144 3667153 ~ 3680599 (+) False prdm9
TU224959 other upstream 162051 3238444 ~ 3239216 (+) True G190028
TU224822 other upstream 379658 2970125 ~ 3021609 (+) False LOC113547538
TU224820 other upstream 411339 2970125 ~ 2989928 (+) False LOC113547538
TU224759 other upstream 640257 2760693 ~ 2761010 (+) True G189864
TU223925 other upstream 1735930 1663092 ~ 1665337 (+) False LOC117598477
TU225438 other downstream 377122 3782131 ~ 3782495 (+) False rasd1
trnae-cuc_25 other downstream 1028232 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225847 other downstream 1188098 4593107 ~ 4595113 (+) False lrrc18b
TU225934 other downstream 1350088 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 1932244 5337253 ~ 5340563 (+) False LOC113527051

Expression Profile