RNA id: XM_034309054.1


Basic Information

Item Value
RNA id XM_034309054.1
length 1633
RNA type mRNA
GC content 0.41
exon number 7
gene id LOC113547484
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3430313 ~ 3453426 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGGCCACATCTGTAGGAGATGGTGTGTTCTTCTCCTTGGTTACAGACGGCCATTGACCATTCTAGCGTTTTATCTGTCAACAGACTGACGAATTGGGCAACTTTGGTGCTGTCCAGGACCCCCTCTTGACCAGCAAAGGCAAGCGAGCACTGCAGCATGAAACTCTTGCAGCCGACCGGGTCGCTGACGTACTTCTCAGGgGGAGCGAAAGACATATTACTTCACAACCTGGAGTGtgtcagagtgagagaaagagaggtctCACTGAACACACGGAAAAGAACATAGCTGTTCGGTTGTAAATGATAAGCAAAGTGCCAAGAAGAGACGCAGGATTAAAGCAGCTTTCTGATCTCAGGACGTCATTGAGAGACCGGTTTATTGAAGCTGGAAATAACCAGATCTGTTTTTAACCGTctgagatggagggagagataaAAGAAGGGAGGAAGATCCAGTTTTCTGTTCCCTCCGCAGGTCCGATTCAGCTTGACCCCAGACAAGTGGAGATGATTCGGCGCCGAAGGCCGACACCAGCCACGCTGTTCTGCATGACAGATCACCCGTCTCCGGAGGAAGAGAATCCCAGCTTTCCGttgtttgtttgtgaaaatgGAGTTTCAAAGTCCCAGAATATAGACATGGCCATTTATCAGCCTCCTTCACTCAAAGCTGTTCAAAAGATGGCACAAGCTCACATCAAATCTTCAGATACTCCTTCATCAGAATCATCCGACAATGAAGATGTTTCTTTGGATGCTCCTAGAGATCCTCCAGATAAGAGTaaatccaaccaatcagatcatCAGTCAGTGTATGAAAGTCAGAAGGAAGAGGCAGAGGAAAAGGATAAAGAAAAGGATGTAGATGAGAGAGGACAAAACACTGATGAGGAAGGAGCTACAGTTCCACCAGACGAAATCAAATCTGAGAAAACAGAGTGTCCATTATCATCAGGAAGATTGGGCGAAgaggagaaaggaaaagaggaagcagAGAATTTAAGAGCAGAAAGCACAGAAAACAGGGAGAGTGAGGAAAAAGGGGAAGAATGAGAGCTGATGACATAGAAAACAGACAggaaacttaaaaaaagaattatatgACAATTTTATGAgaagaaacatatttttataaaatgagGATCTCAGACAGACATAGAGAAAGAgttagatagagagatagagagagagaaagaaagagagagcgagtgagttTGTATGTgggtgtgagacagagagaaaggtcATGTTGAAGGTCAGTATATAAAGAAGTGAAGAAAGAGAagctgttgaagttaataatatgTCATAATGAAGTTTTAATCATTTCTCAGACCAGAAACTTCAAGGTCATTGTAAAATATACACATgttaataaaatttatattaaggccatgatttatttgcttttatacATCTGATTCAAAAATCAAGAACTACTTCATTTCATCAGTGATCgaacacattattacacattattacaaaaCATAGCACAATACAAAATGCATCAGATTATTcaattttaatgtcatttttaagcACTGATGCCTGAGGCCTTTATCcataaatcatttcttttatgACATCCACAAAGTCTGTAATAAATAACTGGATAAATTGAGcacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225147 lncRNA upstream 63146 3367094 ~ 3367293 (+) True G190170
TU225137 lncRNA upstream 77519 3352658 ~ 3352920 (+) True G190160
TU225095 lncRNA upstream 164729 3265501 ~ 3265710 (+) True G190122
TU224964 lncRNA upstream 195829 3234389 ~ 3234610 (+) True G190033
TU224958 lncRNA upstream 208130 3221937 ~ 3222309 (+) True G190027
XR_004579240.1 lncRNA downstream 23644 3477070 ~ 3482359 (+) True LOC117598604
TU225244 lncRNA downstream 23645 3477071 ~ 3477663 (+) True G190258
XR_004579242.1 lncRNA downstream 23721 3477147 ~ 3477778 (+) True LOC117598607
TU225266 lncRNA downstream 54599 3508025 ~ 3508227 (+) True G190277
TU225268 lncRNA downstream 57369 3510795 ~ 3511173 (+) True G190279
XM_026947858.2 mRNA upstream 12508 3416204 ~ 3417931 (+) True LOC113547491
XM_026947915.2 mRNA upstream 165217 3261534 ~ 3265222 (+) True LOC113547534
XM_026947880.2 mRNA upstream 176637 3251702 ~ 3253802 (+) True LOC113547507
XM_026947879.2 mRNA upstream 181215 3244122 ~ 3249224 (+) True pkmyt1
XM_026947840.2 mRNA upstream 254787 3169668 ~ 3175652 (+) True pelo
XM_034309408.1 mRNA downstream 213727 3667153 ~ 3680599 (+) False prdm9
XM_026934864.2 mRNA downstream 214882 3668308 ~ 3680599 (+) True prdm9
XM_026934779.2 mRNA downstream 244368 3697794 ~ 3723243 (+) True lmf1
XM_026934583.2 mRNA downstream 278359 3731785 ~ 3772629 (+) False pemt
XM_026934582.2 mRNA downstream 278364 3731790 ~ 3772629 (+) True pemt
TU225191 other upstream 25430 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 191223 3238444 ~ 3239216 (+) True G190028
TU224822 other upstream 408830 2970125 ~ 3021609 (+) False LOC113547538
TU224820 other upstream 440511 2970125 ~ 2989928 (+) False LOC113547538
TU224759 other upstream 669429 2760693 ~ 2761010 (+) True G189864
TU225438 other downstream 328705 3782131 ~ 3782495 (+) False rasd1
trnae-cuc_25 other downstream 979815 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225847 other downstream 1139681 4593107 ~ 4595113 (+) False lrrc18b
TU225934 other downstream 1301671 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 1883827 5337253 ~ 5340563 (+) False LOC113527051

Expression Profile