RNA id: TU225268


Basic Information

Item Value
RNA id TU225268
length 379
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G190279
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3510795 ~ 3511173 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aaacaatggtCTAGCCTAACTGCGATTGCAGTTTTTgttaaacttttacattttctttagtaTTTTGAAAATCAGCTCCTGCTGATTCACTGTACAGTCGATCAGCTCGGATTCAAAGCGTCATACGTGAATTTAACGCGTCACGGCGCTCGCACTGTTTTCAACTCAGAATAAACCGGCTGCAAATAATGATCCATCTTCAAATGGCGCTGACGCGAATCGGCAGAATAAGGCTccgtttattttaatatacatttacaatcaAAAATACATGATGACAGCTCACATACCTGCATCACGAGCTGcgctttctttgtttctttgtttcttttgagtaCAGGTTTGTTACGGTTATGGAGGCCCCGCCTCCAAGCCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225266 lncRNA upstream 2568 3508025 ~ 3508227 (+) True G190277
XR_004579240.1 lncRNA upstream 28436 3477070 ~ 3482359 (+) True LOC117598604
XR_004579242.1 lncRNA upstream 33017 3477147 ~ 3477778 (+) True LOC117598607
TU225244 lncRNA upstream 33132 3477071 ~ 3477663 (+) True G190258
TU225208 lncRNA upstream 78390 3430313 ~ 3432405 (+) False LOC113547484
XR_004579241.1 lncRNA downstream 11793 3522966 ~ 3533243 (+) True LOC117598605
TU225343 lncRNA downstream 176925 3688098 ~ 3688332 (+) True G190352
TU225348 lncRNA downstream 210769 3721942 ~ 3723045 (+) False lmf1
TU225435 lncRNA downstream 273059 3784232 ~ 3785098 (+) True G190423
TU225489 lncRNA downstream 392907 3904080 ~ 3905283 (+) False p4ha1a
XM_034309054.1 mRNA upstream 57369 3430439 ~ 3453426 (+) True LOC113547484
XM_034309053.1 mRNA upstream 57369 3434556 ~ 3453426 (+) False LOC113547484
XM_034309055.1 mRNA upstream 57369 3434565 ~ 3453426 (+) False LOC113547484
XM_026947858.2 mRNA upstream 92864 3416204 ~ 3417931 (+) True LOC113547491
XM_026947915.2 mRNA upstream 245573 3261534 ~ 3265222 (+) True LOC113547534
XM_034309408.1 mRNA downstream 155980 3667153 ~ 3680599 (+) False prdm9
XM_026934864.2 mRNA downstream 157135 3668308 ~ 3680599 (+) True prdm9
XM_026934779.2 mRNA downstream 186621 3697794 ~ 3723243 (+) True lmf1
XM_026934583.2 mRNA downstream 220612 3731785 ~ 3772629 (+) False pemt
XM_026934582.2 mRNA downstream 220617 3731790 ~ 3772629 (+) True pemt
TU225191 other upstream 105786 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 271579 3238444 ~ 3239216 (+) True G190028
TU224822 other upstream 489186 2970125 ~ 3021609 (+) False LOC113547538
TU224820 other upstream 520867 2970125 ~ 2989928 (+) False LOC113547538
TU224759 other upstream 749785 2760693 ~ 2761010 (+) True G189864
TU225438 other downstream 270958 3782131 ~ 3782495 (+) False rasd1
trnae-cuc_25 other downstream 922068 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225847 other downstream 1081934 4593107 ~ 4595113 (+) False lrrc18b
TU225934 other downstream 1243924 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 1826080 5337253 ~ 5340563 (+) False LOC113527051

Expression Profile