RNA id: TU225293


Basic Information

Item Value
RNA id TU225293
length 271
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G190304
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3497129 ~ 3497399 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cAAGAATATATGGGATATTTGTCACTATGTTGTACATCAGTCTAAATTATGCTTCAGTGTACCCACATGGTCCAGTTCTTTGAAGCACGGGTATGCCTGTAAAATTTTTGCTGGTATGTCTTGCTCCTTCAAAGCACCTGAGTCAATGAAATTTCTTCTGGACTGGAACTCCAGGTCTAAAAGATGAGTTACAGCAGCTTTGTTCGGCTTCTTTGATTTGTACATTTCCTGTAGAGTCCTGTAAAGTCTTGCCTGGATTTTCTGGCTGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225215 lncRNA downstream 69485 3427436 ~ 3427644 (-) True G190232
TU225167 lncRNA downstream 147400 3349374 ~ 3349729 (-) True G190188
TU225044 lncRNA downstream 321494 3174077 ~ 3175635 (-) True G190100
TU225042 lncRNA downstream 321494 3174986 ~ 3175635 (-) False G190100
TU225039 lncRNA downstream 321494 3175074 ~ 3175635 (-) False G190100
XR_004579133.1 lncRNA upstream 38266 3535665 ~ 3536422 (-) True LOC117598465
TU225326 lncRNA upstream 118021 3615420 ~ 3632422 (-) True G190336
XR_004579273.1 lncRNA upstream 153627 3651026 ~ 3655610 (-) True LOC117598641
TU225342 lncRNA upstream 189907 3687306 ~ 3687508 (-) True G190351
TU225345 lncRNA upstream 196565 3693964 ~ 3697421 (-) True G190354
XM_026947852.2 mRNA downstream 100771 3392545 ~ 3396358 (-) False neurod2
XM_034309129.1 mRNA downstream 101068 3392544 ~ 3396061 (-) True neurod2
XM_026947873.2 mRNA downstream 144580 3330026 ~ 3352549 (-) False med1
XM_034309340.1 mRNA downstream 144895 3330028 ~ 3352234 (-) True med1
XM_026947818.2 mRNA downstream 175856 3278909 ~ 3321273 (-) False LOC113547465
XM_026934622.2 mRNA upstream 150969 3648368 ~ 3651024 (-) True LOC113539064
XM_026934964.2 mRNA upstream 286910 3784309 ~ 3785130 (-) True med9
XM_026934959.2 mRNA upstream 318548 3815947 ~ 3830814 (-) False LOC113539277
XM_026934960.2 mRNA upstream 318548 3815947 ~ 3830809 (-) True LOC113539277
XM_026935101.2 mRNA upstream 433041 3930440 ~ 3935138 (-) True arg1
TU224811 other downstream 641636 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 682549 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 691223 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 1286150 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 1926056 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1401375 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1402567 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1403737 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1404929 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1406222 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042787 False 2828 lncRNA 0.37 3 NC_007134.7 15479081 ~ 15483879 (+)
bowfin (Amia calva) AMCG00003834 True 309 mRNA 0.42 2 CM030121.1 19789393 ~ 19789825 (-)