RNA id: TU225345


Basic Information

Item Value
RNA id TU225345
length 200
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G190354
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3693964 ~ 3697421 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCTTTTCTTGTGCTCCAGAGCAACCTCCTGGACACCAAGCAGTCACTTCACGGACACTGCTCTGCTTTCCGTCACTGAAGCCTTATGACTAGCAAGATCAACCTCAAGATCATCCTCATCTTAGTTGACATCTCTGCTGCCTTTGACACTGTGAATTGTCAGATCCTCTTGTCAAATCTCTCTAGTTTAGCCATTACCGG

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04723 Retrograde endocannabinoid signaling
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225342 lncRNA downstream 6456 3687306 ~ 3687508 (-) True G190351
XR_004579273.1 lncRNA downstream 38354 3651026 ~ 3655610 (-) True LOC117598641
TU225326 lncRNA downstream 61542 3615420 ~ 3632422 (-) True G190336
XR_004579133.1 lncRNA downstream 157542 3535665 ~ 3536422 (-) True LOC117598465
TU225293 lncRNA downstream 196565 3497129 ~ 3497399 (-) True G190304
TU225431 lncRNA upstream 79312 3776733 ~ 3776972 (-) True G190419
XR_004579147.1 lncRNA upstream 148364 3845785 ~ 3849920 (-) True LOC117598488
TU225525 lncRNA upstream 222770 3920191 ~ 3925230 (-) True G190490
TU225612 lncRNA upstream 339230 4036651 ~ 4037340 (-) True G190563
TU225706 lncRNA upstream 462355 4159776 ~ 4161007 (-) True G190656
XM_026934622.2 mRNA downstream 42940 3648368 ~ 3651024 (-) True LOC113539064
XM_026947852.2 mRNA downstream 297606 3392545 ~ 3396358 (-) False neurod2
XM_034309129.1 mRNA downstream 297903 3392544 ~ 3396061 (-) True neurod2
XM_026947873.2 mRNA downstream 341415 3330026 ~ 3352549 (-) False med1
XM_026934964.2 mRNA upstream 86888 3784309 ~ 3785130 (-) True med9
XM_026934959.2 mRNA upstream 118526 3815947 ~ 3830814 (-) False LOC113539277
XM_026934960.2 mRNA upstream 118526 3815947 ~ 3830809 (-) True LOC113539277
XM_026935101.2 mRNA upstream 233019 3930440 ~ 3935138 (-) True arg1
XM_034309403.1 mRNA upstream 240861 3938282 ~ 3971885 (-) True heatr1
TU224811 other downstream 838471 2852055 ~ 2855493 (-) True ndufa4
TU224780 other downstream 879384 2793046 ~ 2814580 (-) False LOC117598559
TU224784 other downstream 888058 2800076 ~ 2805906 (-) False LOC113547504
XR_003404831.2 other downstream 1482985 2194987 ~ 2210979 (-) False LOC113547489
TU223956 other downstream 2122891 1568286 ~ 1571073 (-) True G189199
trnap-cgg_2 other upstream 1201353 4898774 ~ 4898845 (-) True trnap-cgg_2
trnap-agg_2 other upstream 1202545 4899966 ~ 4900037 (-) True trnap-agg_2
trnap-ugg_3 other upstream 1203715 4901136 ~ 4901207 (-) True trnap-ugg_3
trnap-ugg_4 other upstream 1204907 4902328 ~ 4902399 (-) True trnap-ugg_4
trnap-ugg_5 other upstream 1206200 4903621 ~ 4903691 (-) True trnap-ugg_5

Expression Profile