RNA id: TU225348


Basic Information

Item Value
RNA id TU225348
length 1104
lncRNA type sense_over
GC content 0.36
exon number 1
gene id lmf1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3697794 ~ 3723243 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTCTTCACAATACCTTAATCACATTTTGTGAACTGCTCCctgtatctttttattttttacacacttacacagaaaatgatcaaatttgtTGTCAAATTGTACTGATGCATTAAGGCGGGAATTCACTCTATAGTTGCATTTACGTTGCATTCTTGGGATCAGAGCTGTCCTGAGTATGTGCCTTAGACTTGCCATAAGTGTGCCATTCCCAGTTTTTCACAGCAAAGCTGGATTATGTCACATGCCAAGCTCCACTTCACTGTTTCTTCCAGATGTAATGGATACCACCAATTTCCTACAAACTAGGCcactaatataaatatgaagtgGACCCATGCAGCATATTTTCATTAGTTTTCATAGCATGGCACTTTGTTAGATCAGTGACTACATCTGTTTTATTCAGTAATCTGCAAGACACATTTTGGGACATAACTTTACAGAAGTTAAGCATCCTGTCTAATCATTATGTGTAAATTTTCAGAGATATTAGTGTCCAGGCTTGGCAGTCACCATGTCTGTCCTGTTCTAGGGGAAATGAAGGGGCTTATGTCAGAATGGAGGCTCTTTAGTTTATATATCTAGAGCAGAAATGACTTCAAACCATGCCATACTGTTTGTGCCTTATAACTCTGTTTGTGATGTGCCTTATATGAACTTGCACCttctaaattttacattttttctctatctaaaaatctaaaagcaTGCTTCCAGTAATTGTAAATGTAGAGATTAGAAGTATATCACAACTGCAGACTGCTTTTTACCTGTGTAAATCCAGCAAACATCAGTCTTTGTTGGTTGAGAGTAAATATTGAGTTGTCTTTGACAAGACAAAAGCATTGATTGGGAACCTAATCTTCCCCTGATAAATTTGTTCACAAAAATTCTAGAATAATAACTGGACACTCCCAGTCCCAGTCACTCCCAGTCAGTGGTTAGCTGATAGTAATAGTAGATTGGAGGGCAAAAAtttaatatctatcaatagcttgacaattaaactattagggttgaccAGTACATTATCTCCCGAGGTCtcattgatgatgatgatgatgataataattatcatcatcatcttttgtTCTGGATAAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225343 lncRNA upstream 33610 3688098 ~ 3688332 (+) True G190352
XR_004579241.1 lncRNA upstream 188699 3522966 ~ 3533243 (+) True LOC117598605
TU225268 lncRNA upstream 210769 3510795 ~ 3511173 (+) True G190279
TU225266 lncRNA upstream 213715 3508025 ~ 3508227 (+) True G190277
XR_004579242.1 lncRNA upstream 244164 3477147 ~ 3477778 (+) True LOC117598607
TU225435 lncRNA downstream 61187 3784232 ~ 3785098 (+) True G190423
TU225489 lncRNA downstream 181035 3904080 ~ 3905283 (+) False p4ha1a
TU225488 lncRNA downstream 248015 3971060 ~ 3971933 (+) True G190462
XR_004579139.1 lncRNA downstream 257635 3980680 ~ 3988391 (+) True LOC117598473
TU225574 lncRNA downstream 263324 3986369 ~ 3994201 (+) False LOC117598473
XM_034309408.1 mRNA upstream 41343 3667153 ~ 3680599 (+) False prdm9
XM_026934864.2 mRNA upstream 41343 3668308 ~ 3680599 (+) True prdm9
XM_034309054.1 mRNA upstream 268516 3430439 ~ 3453426 (+) True LOC113547484
XM_026934583.2 mRNA downstream 8740 3731785 ~ 3772629 (+) False pemt
XM_026934582.2 mRNA downstream 8745 3731790 ~ 3772629 (+) True pemt
XM_026934735.2 mRNA downstream 58116 3781161 ~ 3783609 (+) True rasd1
XM_026934619.2 mRNA downstream 111061 3834106 ~ 3849629 (+) True cops3
XM_034309195.1 mRNA downstream 127633 3850678 ~ 3885740 (+) True usp22
TU225191 other upstream 316933 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 482726 3238444 ~ 3239216 (+) True G190028
TU224822 other upstream 700333 2970125 ~ 3021609 (+) False LOC113547538
TU224820 other upstream 732014 2970125 ~ 2989928 (+) False LOC113547538
TU224759 other upstream 960932 2760693 ~ 2761010 (+) True G189864
TU225438 other downstream 59086 3782131 ~ 3782495 (+) False rasd1
trnae-cuc_25 other downstream 710196 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225847 other downstream 870062 4593107 ~ 4595113 (+) False lrrc18b
TU225934 other downstream 1032052 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 1614208 5337253 ~ 5340563 (+) False LOC113527051