RNA id: TU225438


Basic Information

Item Value
RNA id TU225438
length 365
RNA type TUCP
GC content 0.46
exon number 1
gene id rasd1
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3781161 ~ 3783609 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCAAACGCGTTATCTTATTTCTGAAGCGAGAGGATATTCCACTCGTGACTGCCGATTTCGCGCATTTAGTGGACCTATAACTCACAGCTATGATTAAGAAAATGTCTCCCTCAGAGAACGAGTTTGACATCCCGGCGAAGAACTGCTACAGGATGGTTATTCTGGGCTCGACTAAAGTTGGCAAGTCGGCAATAGTGTCCCGGTTCCTCACCGGAAGGTTTGATGACCAGTACACACCGACCATAGAGGACTTccacagaaaactttacagcaTCAGAGGAGATGTTTACCAACTGGATATTTTAGACACATCGGGAAATCATCCATTTCCTGCTATGAGGAGACTGTCTATACTGACAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225348 lncRNA upstream 59086 3721942 ~ 3723045 (+) False lmf1
TU225343 lncRNA upstream 93799 3688098 ~ 3688332 (+) True G190352
XR_004579241.1 lncRNA upstream 248888 3522966 ~ 3533243 (+) True LOC117598605
TU225268 lncRNA upstream 270958 3510795 ~ 3511173 (+) True G190279
TU225266 lncRNA upstream 273904 3508025 ~ 3508227 (+) True G190277
TU225435 lncRNA downstream 1737 3784232 ~ 3785098 (+) True G190423
TU225489 lncRNA downstream 121585 3904080 ~ 3905283 (+) False p4ha1a
TU225488 lncRNA downstream 188565 3971060 ~ 3971933 (+) True G190462
XR_004579139.1 lncRNA downstream 198185 3980680 ~ 3988391 (+) True LOC117598473
TU225574 lncRNA downstream 203874 3986369 ~ 3994201 (+) False LOC117598473
XM_026934583.2 mRNA upstream 9502 3731785 ~ 3772629 (+) False pemt
XM_026934582.2 mRNA upstream 9502 3731790 ~ 3772629 (+) True pemt
XM_026934779.2 mRNA upstream 58888 3697794 ~ 3723243 (+) True lmf1
XM_034309408.1 mRNA upstream 101532 3667153 ~ 3680599 (+) False prdm9
XM_026934864.2 mRNA upstream 101532 3668308 ~ 3680599 (+) True prdm9
XM_026934619.2 mRNA downstream 51611 3834106 ~ 3849629 (+) True cops3
XM_034309195.1 mRNA downstream 68183 3850678 ~ 3885740 (+) True usp22
XM_026934608.2 mRNA downstream 111788 3894283 ~ 3899869 (+) True dnajc9
XM_034309038.1 mRNA downstream 120852 3903347 ~ 3930443 (+) False p4ha1a
XM_034309039.1 mRNA downstream 121783 3904278 ~ 3930443 (+) True p4ha1a
TU225191 other upstream 377122 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 542915 3238444 ~ 3239216 (+) True G190028
TU224822 other upstream 760522 2970125 ~ 3021609 (+) False LOC113547538
TU224820 other upstream 792203 2970125 ~ 2989928 (+) False LOC113547538
TU224759 other upstream 1021121 2760693 ~ 2761010 (+) True G189864
trnae-cuc_25 other downstream 650746 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225847 other downstream 810612 4593107 ~ 4595113 (+) False lrrc18b
TU225934 other downstream 972602 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 1554758 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 2187248 5969743 ~ 5983237 (+) True G191581

Expression Profile