RNA id: XM_026935096.2


Basic Information

Item Value
RNA id XM_026935096.2
length 2683
RNA type mRNA
GC content 0.45
exon number 15
gene id p4ha1a
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3903347 ~ 3930443 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACGTTAtgcaataaatgtttaataagagTGAACGGatGGAGACTTGGAGCGTATGGTATATATTGCTGATCAGCGCACTTCTTCACGATTGCTCTGCCCACAATGACTTCTATACTTCTGTCGGCCAAATGACAGATCTGCTGTTTATGGAGAAGGATCTGGTGACATCTCTGAAAGACTATATCAAAGCAGAAGAGAGCAAGCTGGAGCAGGTCAAACAttgggttgagaaaatggagaaactAACAGCCACTGCTACATATGACCCTGAGGGCTTCCTTGGTCACCCAGTCAATGCCTTCAAACTGATGAAAAGGCTGAACACAGAGTGGGGTGAAGTAGAAGACCTGGTGCTTAGAGACATGTCTGATGGATTTATCTCCAACCTAACCATCCACCGGCAGTACTTCCCTAGCGATGAAGATCAGGCAGGAGCAGCCAAAGCACTAATCCGTCTTCAGGACACCTATAAGCTAGAAACACATGCTATCTCCACTGGAGATCTTCCTGGTTTGTCTGCAGATATGCCATATAAGAGCACTCTGACAGTGGAGGACTGTTTTGAGTTGGGGAAGATTGCATACTCAGAAGCAGATTACTATCACACAGAGCTGTGGATGGCACAGGCTCTGAGACAGTTGGATGAGGGTGAGGAGTCAAGCGTTGATGCCGTGACCATCCTGGACTACCTGGGCTACTCTGTTTACCAGCAGGGGGAGCTAGAGAGAGCCCTGGAGCATACCAAAAGACTGCTGACGCTAGATCCAGCTCATCAGAGAGCCAATGGCAACCTAAAGTACTTTGAATACCAGCTGGCCAAgcagagaaaagcagagagggagcagagaggaacagaggaggagaaaaaggagCGAGAGAAGAGAGAGGTGGACAGGAAGAAGGATTTCCTTACAGAAAGGAGGAAATATGAGCAGCTTTGCAGAGGTGAAGGAATCAGGCTGACCCCACGCAAACAGAGTCGACTGTTTTGCCGTTTCTACGACAACAACAGGCACCCATACTATGTGCTGGGCCCTGTGAAACAGGAGGATGAGTGGGACCAGCCACGCATTGTCCGTTTCCACAACATCATcagtgaaagagagatggaaaaagtGAAGGAATTGGCCAAGCCCAGGCTGCGCCGAGCCACCATTTCCAACCCTGTCACTGGTGTACTGGAGACCGCCCACTATCGTATCAGCAAGAGTGCCTGGTTAGCAGCCTACGAGCACCCAGTGGTGGACCGCATTAATCAGAGAATTGAGGATATTACAGGTTTGGATGTCAGAACAGCAGAGGAGCTACAGGTGGCTAATTATGGTGTAGGAGGCCAGTATGAGCCACACTTTGACTTTGGACGGAAAGACGAGCCAGACGCCTTTAAGGAGCTGGGCACAGGGAACCGCATTGCCACCTGGCTCTTCTATATGAGTGATGTAGCAGCAGGGGGTGCCACAGTCTTCCCAGAAGTAGGAGCAGCAGTAAAACCAATAAAGGGTACAGCAGTGTTCTGGTATAACCTGTTCCCAAGTGGAGAGGGAGACTACAGCACAAGGCATGCCGCATGCCCAGTACTTATGGGCAATAAGTGGGTTTCAAACAAGTGGATCCATGAAAGAGGTCAGGAGTTCAGAAGGCCGTGTAGTCTGCATAAGACAGACTGATGATAACCTTCCTCATCCCATCCTCCCATCCCATCCTCCTCTTTGATTGTGTCCGCTCTGTGGTTTAAGACCTACGAGATGCTCCTAATAAAACCACAACCCCACTCATGTTTGCCTTTAACAGTCaacctattttatttttatttaaatgtgtgtatgtgtgcctgCCAGCAAATTACATTGATGCCATTGGTGCCTTTTGTCATTGCTCAAAATAGCTGCAGAGAAGAAAGCTGTCCCTCATGACACTCCATCTTTCCAGGTATTAATATAGCTGAGGTACTATGGGGAAAATCTCAAACTTCTATACTCATAAATCAAaattaagacattttaaaccTAAACCTATTTCATCTAAACATTTCTTGCACAAAAACTCTACACTCTGGAGTCCTGAAGTCAGATTGTAGCTATGACTGCGGCTGGATGTCAGACTGTAGCTACAACTGTCAGATTCCATTAGCTGAGCCAGTGGAGTACTGTGCAATACCTTGCTcactctttttgtgtgtgtgtctgtgtgtgggagagGTAAAGGTTAGGCTCATCAAACAaattaatgtcatgtttaaaaCCAAAGGTACACTGTATGTTTAAGCTCTCTCTTTCCGCAGGTGAAACAAGGATTAAAGAAAAAGTGCCcaagaaatattagatatacaAATCAATTTGTTATACAATTTGTCGCAAACAGTGTATGAAATGCAATAGGCCTATTTTTCTTGTGCTAATCACAATTACAGTGGCCACACCACCGCTAGCAGAGAAGGAAAGGCTGTCttaacatttcatcatttcaaagTCTTTCTCTTTGTAATAATAGTGAGACTGTAACACTCTCTAACATGACTCCAGTTACAGTCTCTTACTCCTGTTATctgatcaggaaatgaaagcctCTATTTATGTATCATTTCATGTAGTCTTTTCACTCCAGTGACATAAGATTTGTGGTCAAATCCTGTATAAATATGTGAACATTGTttactacagaaataaagaattcTCTGATCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225489 lncRNA upstream 911 3904080 ~ 3905283 (+) False p4ha1a
TU225435 lncRNA upstream 121096 3784232 ~ 3785098 (+) True G190423
TU225348 lncRNA upstream 183149 3721942 ~ 3723045 (+) False lmf1
TU225343 lncRNA upstream 217862 3688098 ~ 3688332 (+) True G190352
XR_004579241.1 lncRNA upstream 372951 3522966 ~ 3533243 (+) True LOC117598605
TU225488 lncRNA downstream 40617 3971060 ~ 3971933 (+) True G190462
XR_004579139.1 lncRNA downstream 50237 3980680 ~ 3988391 (+) True LOC117598473
TU225574 lncRNA downstream 55926 3986369 ~ 3994201 (+) False LOC117598473
XR_004579287.1 lncRNA downstream 58990 3989433 ~ 3992410 (+) True LOC117598657
XR_003402876.2 lncRNA downstream 247568 4178011 ~ 4238341 (+) True LOC113527450
XM_026934608.2 mRNA upstream 6325 3894283 ~ 3899869 (+) True dnajc9
XM_034309195.1 mRNA upstream 20454 3850678 ~ 3885740 (+) True usp22
XM_026934619.2 mRNA upstream 56565 3834106 ~ 3849629 (+) True cops3
XM_026934735.2 mRNA upstream 122585 3781161 ~ 3783609 (+) True rasd1
XM_026934582.2 mRNA upstream 133565 3731790 ~ 3772629 (+) True pemt
XM_026915663.2 mRNA downstream 100457 4030900 ~ 4159201 (+) False LOC113527654
XM_026915667.2 mRNA downstream 100457 4030900 ~ 4159201 (+) False LOC113527654
XM_026915665.2 mRNA downstream 100559 4031002 ~ 4159201 (+) True LOC113527654
XM_034309352.1 mRNA downstream 613534 4543977 ~ 4547730 (+) True LOC113527300
XM_034309491.1 mRNA downstream 633370 4563813 ~ 4567522 (+) True LOC113527299
TU225438 other upstream 123699 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 501185 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 666978 3238444 ~ 3239216 (+) True G190028
TU224822 other upstream 884585 2970125 ~ 3021609 (+) False LOC113547538
TU224820 other upstream 916266 2970125 ~ 2989928 (+) False LOC113547538
trnae-cuc_25 other downstream 502798 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225847 other downstream 662664 4593107 ~ 4595113 (+) False lrrc18b
TU225934 other downstream 824654 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 1406810 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 2039300 5969743 ~ 5983237 (+) True G191581

Expression Profile