RNA id: XR_004579139.1


Basic Information

Item Value
RNA id XR_004579139.1
length 5226
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id LOC117598473
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 3980680 ~ 3994201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAAAACGTGAAGTGTGAATATATAATCACGCTCATTGTTGAGATTCTaacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCAGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTCTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGCAGCACTGATTTACGCTATATTCATAAGTGCTTCTCTTTGGGGCAGTCTCATCTGTGTATTTGACTTTACTGTCTTCTGTGACTACTGCATTTAAAACGTATTTCGATGTGGGTTGGGCTGTGAACCATCTAAGGTCTGGACAGATACTGGAACAACATGTTGCATTGGTAAATTCTCAGTCAAAAGGTTCTACAGTAGCAGATATGTAACGAATGTATACTTTAATCAGAAATTAGTGCAGCTGAAGTTTCAGTGAAGACGGCAATCAGCATTATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAAAACGTGAAGTGTGAATATATAATCACGCTCATTGTTGAGATTCTaacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCGGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTCTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGCAGCACTGATTTACGCTATATTCATAAGTGCTTCTCTTTGGGGCAGTCTCATCTGTGTATTTGACTTTACTGTCTTCTGTGACTACTGCATTTAAAACGTATTTCGATGTGGGTTGGGCTGTGAACCATCTAAGGTCTGGACAGATACTGGAACAACATGTTGCATTGGTAAATTCTCAGTCAAAAGGTTCTACAGTAGCAGATATGTAACGAATGTATACTTTAATCGGGAATTAGTGCAGCTGAAGTTTCAGTGAAGACGACAATCAGCATTATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAAAACGTGAAGTGTGAATATATAATCACGCTCATTGTTGAGATTCTaacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCAGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTCTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGCAGCACTGATTTACGCTATATTCATAAGTGCTTCTCTTTGGGGCAGTCTCATCTGTGTATTTGACTTTACTGTCTTCTGTGACTACTGCATTTAAAACGTATTTCGATGTGGGTTGGGCTGTGAACCATCTAAGGTCTGGACAGATACTGGAACAACATGTTGCATTGGTAAATTCTCAGTCAAAAGGTTCTACAGTAGCAGATATGTAACGAATGTATACTTTAATCAGAAATTAGTGCAGCTGAAGTTTCAGTGAAGACGGCAATCAGCATTATCGTCACAGTTGATACCCTAACAATGGCTCTGACCTGTCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTAGTTTTCAGTGATTTGATCaactgaatgaagaaaaacttttaTCCAGGTTTTATTAAACTACTGATACATGAGATAACATGCAATACTTTCCAATTAAAGCACAATTAGATTACTTCAAACAGAAGCACTGATTTTCATATCATTAATAAGTGCTACTCTTTGGGGCAGTCTCATCTGTGTATCTGACTTTACTAAGTTGTGTGAGAAGTACATCTCTGAATGTTACCCTAATTGTAGCACATTTACTGCAGTTTTAATGTAAGTGCTAACAAGTTGGGGCAACTTTCAGTGAATTTGGACACCAAGAACGTGAAGTGTGAATATATAATCACGCTGATTGGTGAGATTCTtacataattgttttattttagaaagatttattcaaattattccaCTGAATTCAGTGAATTTCATGCAGAAACTTGTAAAACTAATACAGAAATACCTTGTAATTGCAACAGTTAACTCATCATTTGGTTGTGTACCTACACTTAATCTAGAGTGCTAAGTGGCCATCAATGTGTGAATCACTTGGTTCTTTCACATGGACTGATCAACCATCATCAGCTCTGTTGTCACATTGGATTTTGTGGGTTGGACTGTGAACCATCTCATTTTCTGATCGGATTCTGGGCATTTAAATGAACCACACGTGAATCAGGTCCCTCAGAAGGAAAAAGAGATCGACTGGTAAATTCTCGCTGCAGACTTTGTAGAATAGCAGGCatgtaatgattatatattttcgTGGTAAATATGGCAGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGAGAAGATGCAAAGAAGAAGACGACCTATCTGTCTTTTTATCACAATTGATACCCTAACAGTGGCTCTGGCCTTCCTGAATCATTTGGTAAGTGCTATTTGTTGGGGTGGTTTTGGGTGATTCCAGCAACTGAAGATACTTTTTACATCTTATGAAACTAATCTGAATGGGGGAACATCCAATACATTCAAAAGAAAGCACAATTAGATCACTTCAAATAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225488 lncRNA upstream 8747 3971060 ~ 3971933 (+) True G190462
TU225489 lncRNA upstream 75397 3904080 ~ 3905283 (+) False p4ha1a
TU225435 lncRNA upstream 195582 3784232 ~ 3785098 (+) True G190423
TU225348 lncRNA upstream 257635 3721942 ~ 3723045 (+) False lmf1
TU225343 lncRNA upstream 292348 3688098 ~ 3688332 (+) True G190352
XR_004579287.1 lncRNA downstream 1042 3989433 ~ 3992410 (+) True LOC117598657
XR_003402876.2 lncRNA downstream 189620 4178011 ~ 4238341 (+) True LOC113527450
TU225713 lncRNA downstream 189628 4178019 ~ 4238378 (+) False LOC113527450
TU225719 lncRNA downstream 244504 4232895 ~ 4286651 (+) True G190668
XR_004579130.1 lncRNA downstream 259792 4248183 ~ 4257048 (+) True LOC113527449
XM_034309038.1 mRNA upstream 50237 3903347 ~ 3930443 (+) False p4ha1a
XM_026915663.2 mRNA downstream 42509 4030900 ~ 4159201 (+) False LOC113527654
XM_026915667.2 mRNA downstream 42509 4030900 ~ 4159201 (+) False LOC113527654
XM_026915665.2 mRNA downstream 42611 4031002 ~ 4159201 (+) True LOC113527654
XM_034309352.1 mRNA downstream 555586 4543977 ~ 4547730 (+) True LOC113527300
XM_034309491.1 mRNA downstream 575422 4563813 ~ 4567522 (+) True LOC113527299
TU225438 other upstream 198185 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 575671 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 741464 3238444 ~ 3239216 (+) True G190028
TU224822 other upstream 959071 2970125 ~ 3021609 (+) False LOC113547538
TU224820 other upstream 990752 2970125 ~ 2989928 (+) False LOC113547538
trnae-cuc_25 other downstream 444850 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225847 other downstream 604716 4593107 ~ 4595113 (+) False lrrc18b
TU225934 other downstream 766706 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 1348862 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 1981352 5969743 ~ 5983237 (+) True G191581

Expression Profile