RNA id: TU225852


Basic Information

Item Value
RNA id TU225852
length 2151
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G190797
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4625619 ~ 4628876 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTTGCAGTACATGTTTTAACATTGGCTTGGTGAGATCCCAGTGCATTTATTCTAGTAGTGCACTTCTGATAGTCTGTATGCAGGAAGGAGCACACAGAGTAAGGATTTTGCATTGCCAGTATTGCTAGCAAAGATTACAGACCAGCTTACACAAGTAGGCttttagggattttttttttttgtctttcagccTTACTAGAATGATCCATTGGCCATGTAAATCATACACCTCTGTCTAGTTCCAGATCATCAGTTTTTGTGACACAAATTAACTTGTCACAGAGaacttaattaaaaataaagatccAAATTCATGAATTTAGCATTGCATTTTAGCTGaattaaactgaactgaattgacaGTACCTAACATTTCTCTACCTTTGGGAACATACAGCTAACATACTGTAGCTAGATACACTTACGAGTAAGCACACAGAGCAGAGGGTATTGCACatgaactgtttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacattcacctatacaaaaatgaaataataataataatagtaaggcAACACTTTTcattaaggttcccttaactaacattatttacagctTTAATCAACATTAACAAACCATAAACTTCTGCAGAATGTTAACACTTACAGCATGTTATTAAATGTTCAGAACTTACTGAACGCTGGTGTTCAGGtgtaaatattacaactttCTTTTCAGCCTGCGTTCTGAATCTCCCAGGTAACAACCACATGTTCGTTAAGGTGATGTTCATGTTGCCCACATCACTGTAGGCTTTAGTTTACTGAGTGATGGTAGAACATTGATTAATGGACGTGTtgaatatttggtttattatttaaaagataGCATCAATTAATACAAGTGTTATTACTTCGATTGTTAACGTTAATTGGATTATTAATGCTGGAGTTTATGGTTTGTTCATAGTAATGTGTATTAAATAATGTCACTAAATGGACACTTAATGTAAAGCGTTACCAACAAAATATCTGAGTGAGACAGCTTTTTATAATCTTACAGAATACGTCACTACGTATATACGTAGAATATACGTATATAATTCAATTATATACGTACGTATATAATTTCAAATCATAACTTACTTTCTTATCTATACTGCTATTCATACATTCCACTGAAATAACGCCGTATTTCCTGTATTTCGAGTCATAACTAAAAGCTTACTGGAAAATACCCCGTGCACTCACAAAGTCCTGTAATGCCCTGCAATAGATAGTGTCCAAATGACACATTCTAGCAGGCACAGaatacccagaatgcactgtgCCATTTAGAGACATGACCTATACTGTAAATAGGGTTTCACAAATGTTCTACATCAAACTGTTCACCTTACAAGAGCCTTGCAACATTCCAGGGCCAAGCGGTACAAAGCACTaaagaccaaaaaaattaataataataataataataataatataacctTTAATTTACCCTTTACTGCTGTTTAGATTTTAACCTCAAAACCTGTACAGTATGGATGTATTTAATCTATAAAGTCCTGTAGCAAAATCAACCAAAAAAGAGAGGACAAAATAAGTATGTTAAAATGcctattataaataattttttttttgtaaaatagtgAAAGAACCGAATAAATGCGCTATGACCTGATCTCAGCATTAAGTCATGCGAGAAAGACTCTGAAGTAATATTTgcttattaaacaaatattctGGAAATTCATTCAAGATGCATTGTATTTAACTCTAAAACAGTAACAGAATGACAGAGCTGAGTCTTTAACACAATGTGCCATTCTGCTAAACTGCCATAAACTTGGCTCACAGCAATCTTGAAATTCAAAGCATCTTCAAATATAAATTTACCGTACAACCGTTACAAATGAACAACATGGCATTGAGGAGATGCAGCGGTAGTTTCAGTCTGACACTAAATCAAGTCGTTCCCCCCCCcaacccacaaaaaaaaaaagcgaccAAAGTAACGCTGGTTTGGTGTAAAAGCTTCTTAAGGTGCCTTTTAAAAACTCCCACCTTACTCTGACTTTTTCCCCTGACCGAAAAGAAACGAAGTCAGTCTGAAAACGGATGGAGGAAGGTCACGGAGGTGAGAAGGATGGGGTGATGGTCAACTGCAGCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225848 lncRNA upstream 28690 4596690 ~ 4596929 (+) True G190795
TU225827 lncRNA upstream 138863 4486523 ~ 4486756 (+) True G190775
TU225800 lncRNA upstream 328380 4296393 ~ 4297239 (+) True G190748
TU225719 lncRNA upstream 338968 4232895 ~ 4286651 (+) True G190668
XR_004579130.1 lncRNA upstream 368571 4248183 ~ 4257048 (+) True LOC113527449
TU225933 lncRNA downstream 126221 4755097 ~ 4839369 (+) False G190865
TU225936 lncRNA downstream 126221 4755097 ~ 4839369 (+) True G190865
TU226075 lncRNA downstream 430641 5059517 ~ 5063419 (+) True G190964
TU226144 lncRNA downstream 627565 5256441 ~ 5262085 (+) True G191026
TU226154 lncRNA downstream 640371 5269247 ~ 5282643 (+) True G191032
XM_026915685.2 mRNA upstream 272 4600300 ~ 4625347 (+) True si:dkey-191m6.4
XM_026915686.2 mRNA upstream 272 4600301 ~ 4625347 (+) False si:dkey-191m6.4
XM_026915688.2 mRNA upstream 272 4620596 ~ 4625347 (+) False si:dkey-191m6.4
XM_026915615.2 mRNA upstream 29590 4593115 ~ 4596029 (+) True lrrc18b
XM_026915384.2 mRNA upstream 39119 4570058 ~ 4586500 (+) True vstm4b
XM_026914937.2 mRNA downstream 22844 4651720 ~ 4669858 (+) True frmpd2
XM_026915450.2 mRNA downstream 82619 4711495 ~ 4714663 (+) True gdf10b
XM_026915695.2 mRNA downstream 87190 4716066 ~ 4718035 (+) True gdf2
XM_026915704.2 mRNA downstream 93636 4722512 ~ 4726063 (+) True rbp3
XM_026915253.2 mRNA downstream 102254 4731130 ~ 4750850 (+) True antxr1c
TU225847 other upstream 30506 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 192307 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 843124 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 1220610 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 1386403 3238444 ~ 3239216 (+) True G190028
TU225934 other downstream 126221 4755097 ~ 4839369 (+) False G190865
TU226411 other downstream 708377 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 1340867 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 1586969 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 1587491 6216367 ~ 6216448 (+) True trnal-aag_2

Expression Profile