RNA id: TU225936


Basic Information

Item Value
RNA id TU225936
length 2447
lncRNA type read_through
GC content 0.37
exon number 3
gene id G190865
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4755097 ~ 4839369 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaAACCGATCTgtctgaacactgaacactctgaacactctaccatggcagaaaacatactgactgttacaaagtgctgaaactggagtctccttccataaatgttaaatgaatatCTCGAGAGGCCTAGACtatgttcaagttcaagtgttcaagtggagtttattgtcatttcagccatatacaagtacatagtgaaacgaaacaacgtttcttcaggaccaaggtgctacataagaaacacagaacaacatagaactacaagggactacataaattatacaataaagtgcacaagtgtaaacatgtgcagacagcacaagacagtacaagacagtacaatgactactgggacagacaatgggcatagtaagtcccagtgcagcgcccaccagtacacagttctgttcaaagtgaacctagtgacaatagtgcaaatagtacaagagaacaaaacaagtagctgaaatagtataaacataagtgtaaacataagagtagcagcctatgaacagtataatataatgagtaatgtagcagcatagacatgtgcaaaaacttgcagaaaggatgctcagttgtgtgtgtatattggtatgtgtgtgtgtgtgttccttcagtccagtttctgagtattggaggtatgtgtgagtgcgttccttcagtccagttactgagtattgaggagtctaattgcatgggggaagaaactattgcacagtctggtcatgAGGGCCCGAATgtttcggtaccgtttaccagacagcaggagggtgaagagtgtgtgagaggggtgtgtgggggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatacacacacactctcactgtacactttaataggaacacctgcacacccaTTACAGAATTTCTAACCATTATTTCATTGATCTTGTGTTCATCTTGCTAGGAATGATCTCTCTTTCACTTGCACCAAGGCTTTATTTGAATGGAAGTCATAGTTTCACCGGGGTTCAAAGCCAGTGCCAAAATGCAAGTCACAACAAGAAGTCTTATTCAAATTATTACAGTCCTAATACCAGCCAAGAATATTTCCAGTTATCACATTAGCAATTAAGCAAAATAGCAAGATTTAACAGACTGTAAATCTCCAGTATTAGCAATGCCAGTTTCAGTAAGTTGTTCCATACTGTCGTTTTTAATTTCAATAAGTTTACTTTAGGAGCTTTGTGccatattaattaatgtatgCGTGCTTTTTCTGAACTTCATGCAACAACACATTGTTTTGtgcaaaatatgtttttgtggttttgtgtttgtAATGTAGAATAAATAGCACAATTTCAATGCATAAAGGCTGTAAAAATATATGatggtgagtcaaatgaaaaccttaaaattGCGACAAATTAGAATTAAAGCAAATTTGTTTCTAAAAGAATCCAGGCACTCATTACACACTGGAACACTTGTATTGAACTAAATGTAGGTTatatagaaaaatgaaaaaacacctatttgcaataaccaaaaaaaataaataaatttaaagaagttaatgttttcatttgacttGCCCTTTTATTTACAGGATACCTGTTTTTAAAGTGTATAAGCCATAGAGAATGCCCAGTGCCCTCTCTCATCATTGTTACACTTTATTCcttcacattatatatttattaaatagtaTTTTATGCCCTAAGGTACCCAGAGTTTCTCACTCACAGTCTATATGATCATCTATCTTTCTatgtataaaaacatatattaatcTAGCTTTGCTTGGCTTTTGTTACTAAAGACTCTATACTCTTGCTAGCCCAAACCTTGAGCTGGTTTCTTGACACTTGCAGTCATTAGAACTGCAGGTACCATAAACAGTGGACCatatgttctttttcttttttaaatttgatttcagTTTTGCGTTGATTTCCAGTGTGTCATcaacaaaatgattttttggTATAGCTTGTCGTAATGGCAGTTTAAGCAATAAAAAGTTGCCGAGatgtttgtattcattttttctaCTGAATGCTTAATCATGAAGTGTTTAATCCTGTGTAGGGCAAATGGATGTATCATTAAAATGAAGTCATAATGTATGCCAACCACAAGGGGGcagtttttggttttggttcAGTTATTAGCTTAATGTTTGTTAAATCTGGAAAAATAGTGGCTTGTTTCGTATCCATGATTGACACTGGTTTATAGTGCTGAAACTGGCTAAGTTTTAAAGTGGAAAGTAAACTTGGATAAACCTGGCCCCCACTGAAACTGCACTGGCTTGCCCTGAACTGTTTTGTGGAATAAAGGAAAGCTTGCTAATAAGTAGAAATTCCATGTAAGCATTCCAAAAGCACAAGAAAATCTTGGCTAACCACATTTTCTGTATCTTACAATGAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225852 lncRNA upstream 126221 4625619 ~ 4628876 (+) True G190797
TU225848 lncRNA upstream 158168 4596690 ~ 4596929 (+) True G190795
TU225827 lncRNA upstream 268341 4486523 ~ 4486756 (+) True G190775
TU225800 lncRNA upstream 457858 4296393 ~ 4297239 (+) True G190748
XR_004579130.1 lncRNA upstream 498049 4248183 ~ 4257048 (+) True LOC113527449
TU226075 lncRNA downstream 220148 5059517 ~ 5063419 (+) True G190964
TU226144 lncRNA downstream 417072 5256441 ~ 5262085 (+) True G191026
TU226154 lncRNA downstream 429878 5269247 ~ 5282643 (+) True G191032
TU226403 lncRNA downstream 463772 5303141 ~ 5304909 (+) False gngt2b
TU226407 lncRNA downstream 468850 5308219 ~ 5309374 (+) True G191258
XM_026915253.2 mRNA upstream 4247 4731130 ~ 4750850 (+) True antxr1c
XM_026915254.2 mRNA upstream 4247 4737916 ~ 4750850 (+) False antxr1c
XM_026915704.2 mRNA upstream 29034 4722512 ~ 4726063 (+) True rbp3
XM_026915695.2 mRNA upstream 37062 4716066 ~ 4718035 (+) True gdf2
XM_026915450.2 mRNA upstream 40434 4711495 ~ 4714663 (+) True gdf10b
XM_026914978.2 mRNA downstream 82861 4922230 ~ 4961609 (+) True taok2b
XM_026915353.2 mRNA downstream 122991 4962360 ~ 4972009 (+) True maz
XM_026915912.2 mRNA downstream 138508 4977877 ~ 4988518 (+) True tlcd3bb
XM_026914593.2 mRNA downstream 159522 4998891 ~ 5005921 (+) True vps25
XM_026915710.2 mRNA downstream 171218 5010587 ~ 5059438 (+) True wnk4a
TU225847 other upstream 159984 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 321785 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 972602 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 1350088 3401267 ~ 3405009 (+) True G190212
TU224959 other upstream 1515881 3238444 ~ 3239216 (+) True G190028
TU226411 other downstream 497884 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 1130374 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 1376476 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 1376998 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 1383348 6222717 ~ 6222798 (+) True trnal-uag

Expression Profile