RNA id: TU226075


Basic Information

Item Value
RNA id TU226075
length 1451
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G190964
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5059517 ~ 5063419 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATCAGACATTTATTTAggttgcaaaaaacaaaacctttacAGCTTAATATTATTTACCATTTAAACTTttcatcaacatttttttccattatatggccaaaggtctATGCAGCGCTGAACCCTGTGTCAGAGAACACTCACTTTCCATGGAGCAGAAGGTTTAGCAGTGCCCTCTTGTGGTACATTGATTCAATTTCCTCACAATTATTGACTGTAATTTTCATTCAAGACATAATTGTTCTTCCAGTCTGTGGCTTTCTTATACAAATCTTCATGAATGAACAGAGGAGCATCTGGTAGTCTTGAAGAATCTATTGCTGAGTCTCAAATGGCTCCATTCTGGACAGAGTTTTGCACTGGCTCATTGCAGTCCTATTCTGCTCCAGGAAATTTATGCTGTACCTCAAACACTAGAATTCATGTCTAGTTAATGTTCTTATTAGATAATATAATCAGTTCTAATAAGGCTAACTAGTTCAGGGATCTTCAACCTTATCCAGAAAGTGTGTTCCTGCTTGATCAGAATGAAAAACCACAGTGGTTAAGATGGACTACCGATAGGAAGTTCATGAGCTCAAATCCCAGcgctgccaagctgccactgctgggcccttgagcaaggtccttaaccctcaactgctcagctgtatacatgaaaataatctaaaacgctctggataagggcgtctgccaaatgccgtaattTTAAATGTACGTCAAacctttgtggataagactaAAGACCCATGGTGTAGTTTGTAGCCAAGGAATGGTAGTTTTTACACAAGTGTTTAGTATACACACCTAGTTTAGACTTGTTAAAATAGACCACACATAATCAACACTTTATGTGACATCTGAATATTAAGGCTAAGtgtactggaaaaaaaaaacgtctgcACATCTCCAGAAATAAGTAATGGGCAGCCTGATAACAAAGATATAGAATTATTTCATTCTCTATGTAGTTCACTTATAGATGAGGCAGGGAGCCATTTGAGAATaggcccaaaaaaaaaaaaaaaaaaacggttgcCTTTCATTGGTGCAAACCACAGTGCAAAACATCTTTTGGCAACCAATTCTAATTTTAGTTAGTTCGCTCCAGTCTTTGAGTTTCGCATCCTGGCAGCCACCTTTGCTTCTTCATCTATCTCATCCATGATCCTTTCTTGAGACACAGAGTAGAATGTATACCCATATTCCCATCACTAGGGCTCCAATGGCGAGTCCAGTTATGACATTTCTGGTGCGGAGTTTTTGGCTCTTCTTCCTCCACTGAGCAAGTTCCGCTTGCCGGATGAACTGCAGCTGCTCTCGTGTCAGACTCTCCTTGGTAGGGTCTATCCTCCTGGCAAACTCGCCTTCAGGTTTACCTTTACCTTCCTGGTCAGCCATGCTTTCGCgagcgcttgtgtgtgtgtgtgttttagcggTCAAAGTCGCGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU225933 lncRNA upstream 220148 4755097 ~ 4839369 (+) False G190865
TU225936 lncRNA upstream 220148 4755097 ~ 4839369 (+) True G190865
TU225852 lncRNA upstream 430641 4625619 ~ 4628876 (+) True G190797
TU225848 lncRNA upstream 462588 4596690 ~ 4596929 (+) True G190795
TU225827 lncRNA upstream 572761 4486523 ~ 4486756 (+) True G190775
TU226144 lncRNA downstream 193022 5256441 ~ 5262085 (+) True G191026
TU226154 lncRNA downstream 205828 5269247 ~ 5282643 (+) True G191032
TU226403 lncRNA downstream 239722 5303141 ~ 5304909 (+) False gngt2b
TU226407 lncRNA downstream 244800 5308219 ~ 5309374 (+) True G191258
TU226420 lncRNA downstream 299869 5363288 ~ 5363503 (+) True G191266
XM_026915710.2 mRNA upstream 79 5010587 ~ 5059438 (+) True wnk4a
XM_026915711.2 mRNA upstream 79 5010587 ~ 5059438 (+) False wnk4a
XM_026914593.2 mRNA upstream 53596 4998891 ~ 5005921 (+) True vps25
XM_026915912.2 mRNA upstream 70999 4977877 ~ 4988518 (+) True tlcd3bb
XM_026915353.2 mRNA upstream 87508 4962360 ~ 4972009 (+) True maz
XM_026915778.2 mRNA downstream 176 5063595 ~ 5070223 (+) True cntd1
XM_034309452.1 mRNA downstream 14099 5077518 ~ 5250512 (+) True tanc2b
XM_026915009.2 mRNA downstream 14099 5077518 ~ 5250512 (+) False tanc2b
XM_026915012.2 mRNA downstream 14099 5077518 ~ 5250512 (+) False tanc2b
XM_026915013.2 mRNA downstream 14099 5077518 ~ 5250512 (+) False tanc2b
TU225934 other upstream 220148 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 464404 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 626205 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1277022 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 1654508 3401267 ~ 3405009 (+) True G190212
TU226411 other downstream 273834 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 906324 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 1152426 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 1152948 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 1159298 6222717 ~ 6222798 (+) True trnal-uag

Expression Profile