RNA id: TU226144


Basic Information

Item Value
RNA id TU226144
length 1862
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G191026
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5256441 ~ 5262085 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAACCTTTTAAAGCAGTACAATTTCTACAAAGTTTGAGACACATGTAGAGAATCTTGAATCCTCCGTGATGCACCTTTTTAAACTCCTTTGTATTCTTAGGCTTGTGCATATGGACACCATCAATTCACATCACTGGTATTCAATTGGGTCCAGCCTGGAGGCCCTTTTTACAATAATACCTTTATTCTCCCTATTACTGCCACaaaaatgccaataatataTCGGGCCAATGCTAtgactttatttttcctttgtgTTATGAACACACAAAAAGGCCTCAATGTCTGCAATTCTGCTTGATATGGCATTTAGACTGACTCATCTTCCTGTAAGGttacatattatttttaatggagTTGCCATTGTATTACCTCTGTTGAAGGGTGCTAAACAGACGGCCACTGCAAAACACCGTTTACGTTTTGTCTCATTCTCTTAACAACAGGAGAATAAAAGGCCTTTACAGTCAAGTCGGTTTGCATGTCCCACTGTTACATGAAGAGAGAACATGTATGTAATAGCAATAATGAAATACTGTACACAATAGTTGAATTGTTGAATGTTCAAGTCATAACTTCAACCAGACAACcagattttgcattaaaatgtcCCAGTACGCAGCAGAATTAATGATGGCATTAAGGGCCCTTAGATCACTAGCCACAAATCAGCCCCACAGCACCAATGATCCACCACATTTTAGGCTAGGGACCTTTGCTTATACATGCTGATGTTGCTCATGATCAGAAAGTTTGACTTTGGTCTGCAGCACTCAATTTTCAATGGAGTTCAGGAGCTGCAAATTGTGTGCTGTTCTTAGGAAGGGCTTCTTTCAGGTGACATTCCAACAAAATTGCTATCCAGTGGTTGATTTGCCAAGAATCAACTAAACTGTGCACTTCTGTGACCTTGCACCAACAGCAACCTGTTAACCAGCATTTCCCCATCAAGATGAATGATCAAACATTTTATATGTaagcacatacagtatttagACTTAAGAAAATCCTGACAAGGTCAAAAACAATAGCAGAATTATTGCTTATAATGGAACTGCAAACATGCAGACTGCTCACGATTGGGATTACTCAAGAAGGAATGTTTTCTCAGGGCATATTCCCTGTATACATTTAACGTCTTCATTATAAATATTGCTTTATTATTCTGTCTGGGACATATTACTAccgtttattaaaaaaaaaaaaatcagtgtgaaaaaaaatcagtgtttgaatTGGACAGAACATTTtgacagaacaaaacaaatttaGTGGACAATATGAAAATTGTCATTCTTCTCAATATGGAATGATACCTGTAGAATAAACAGCTAGCCTTGTGACAACTAATGTGATGGTCCTGGAACAGCCATTTGTCAATACACTACCTTCGGTGGCAATTTTTGACTCCATACAGAGGTTAAAAgtcattctgttcattcttcTCAGTCCCTCTTGGGTTTGGCTGTGAGGAGATGCACCAGGCCAGGTACTAGCACCATCACTACCTGGGGCACTATGACATATTTGAGGAAAAAGAGTGAGTAAAAGAGGAGGGCTGGAGCTGTAGGCAGAGGGAACCGGCTCACGTGGTACAGGGCCATGGAGGACAGCGCCATGCAGAGGGTCTTTGGCACCCAGGGAAGTACCCATCCTCCCGGCTTCCAGAACTGGGCAAGCCCCAGCCCGAGCAGCGCGCCAGCATCACGGCTCAGAGAGGAGAAAGGATTTGTGTCCATGCGAACCCACTCAGACTTAGAGCACCATCTCTTGGCCAACGCAATAGACCTGGAGTTCATTGAAAAGGCTGATGAGAAGATATTCATGGCATAATGTGAGATTGAACACTGACCTGTCAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226075 lncRNA upstream 193022 5059517 ~ 5063419 (+) True G190964
TU225933 lncRNA upstream 417072 4755097 ~ 4839369 (+) False G190865
TU225936 lncRNA upstream 417072 4755097 ~ 4839369 (+) True G190865
TU225852 lncRNA upstream 627565 4625619 ~ 4628876 (+) True G190797
TU225848 lncRNA upstream 659512 4596690 ~ 4596929 (+) True G190795
TU226154 lncRNA downstream 7162 5269247 ~ 5282643 (+) True G191032
TU226403 lncRNA downstream 41056 5303141 ~ 5304909 (+) False gngt2b
TU226407 lncRNA downstream 46134 5308219 ~ 5309374 (+) True G191258
TU226420 lncRNA downstream 101203 5363288 ~ 5363503 (+) True G191266
TU226421 lncRNA downstream 104051 5366136 ~ 5366358 (+) True G191267
XM_034309452.1 mRNA upstream 5929 5077518 ~ 5250512 (+) True tanc2b
XM_026915009.2 mRNA upstream 5929 5077518 ~ 5250512 (+) False tanc2b
XM_026915012.2 mRNA upstream 5929 5077518 ~ 5250512 (+) False tanc2b
XM_026915013.2 mRNA upstream 5929 5077518 ~ 5250512 (+) False tanc2b
XM_026915014.2 mRNA upstream 5929 5147899 ~ 5250512 (+) False tanc2b
XM_026915637.2 mRNA downstream 5708 5267793 ~ 5284150 (+) True lsm12b
XM_026915802.2 mRNA downstream 40992 5303077 ~ 5304876 (+) True gngt2b
XM_026914520.2 mRNA downstream 67957 5330042 ~ 5340521 (+) True LOC113527051
XM_026915780.2 mRNA downstream 120926 5383011 ~ 5404806 (+) True col1a1b
XM_026915781.2 mRNA downstream 120926 5383011 ~ 5404806 (+) False col1a1b
TU225934 other upstream 417072 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 661328 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 823129 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1473946 3782131 ~ 3782495 (+) False rasd1
TU225191 other upstream 1851432 3401267 ~ 3405009 (+) True G190212
TU226411 other downstream 75168 5337253 ~ 5340563 (+) False LOC113527051
TU226808 other downstream 707658 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 953760 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 954282 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 960632 6222717 ~ 6222798 (+) True trnal-uag

Expression Profile