RNA id: TU226185


Basic Information

Item Value
RNA id TU226185
length 3673
RNA type TUCP
GC content 0.44
exon number 2
gene id G191056
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 4949163 ~ 4952859 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

acaaatatattatttaaataattgctGATTCAAAGAATAGACACAGAAAATGTGTAAACAAAGATGAAATGTTCACAAAAAATTACATTCAAAAACAACTGTTATGGCTGAACTACAACTGTGTTTTGTTACTGGTTCACATTTGGTCAAATTTGCTTCTATGTAGCTCAtatcatttaaaatttgtttaaataaaacaaaccttGGTTTGCATCTACTCTTGTACTAATATGTTGGGTCATTccatcttttttaaataaataaaatgcttttttcaaGTTTTAATCAATATTGAGACCATTTAAGATTAGAACAGTGCAAGATagtaagtaataagtaataaagcgTCTTGTTTTTTTCATGGATTTTATGGCTTTAGAGATCTTTGGTATGATTTTGGATCATCGGCACACCCCACAGAGCTGCCATAATGGCTTAGCCTTAGGAAAGTAGCCTTAGCAACTACAAAAACAGCTAAgcaaattatgaaataatttgaTATAAGTAGAATATTTGCTGTCCAACAGTAAATATGTTGTCTTCATATAAAAGTATATGACTAAAATGTTTACATggtaaatcattcattcattcattcagtcatcttcagtaaccgtttatcctggtcagggttgcagtgaatctggagcctatcctgggtgtgaggtgggaatacaccctggctGAGACACCAGTCTATCACAATACatagtaaataattaaacttATTcccaataaaacacaacactatTATTAAGATCATCGTCTTTTTAGCCCTATTTAGCCCAGTACTCAAATCAACCTGAAGGCATTTTCTCATATAGGTATAAATGTAGCCTTAGAGACATGgaacatttctctcagatctGTGCTTATTGGGCTTTAAAATAATGGTTGGACTAATggttcagactttttttttagcttcatTATGTTCTGAGGCAAACATGCAACTGCAATTTCTTTACAAGCTGCATTCAAAACTCACTTGAACCCGTTACTCTTGAGAAGAGAAAGGccaaatgacaaaaacaaaacaaagcgaATTGTTTTAAAGTAAGGCCTAAAACATATCATTATAACACCAAGGCAGCTGTCATTATTACAGCAATCAAAATGGGAATACAGTGATCTCCCAGAGCATGCAAGTAATTTACTATCAAAATTcatagtgttttttgtttgtttgttttgttttttccccagggTTGGGCTAGTGGGGGTTAGGGAAATTGAGGGGAGTGCTCCATagtgtaaaaatgttaaataacagtaCAGTTTTCACAGTGGGTGCTACAGTGACATCTGCATCTTAATAATTGTAGCTATGGCTTCAGAATTAGGCCTATAGCATCAGTCTCTGACTGCCCTTTTGAAATAAGATGTAATGCTAGCAACTTTTCTGAAATCCTTCACAAGCACACCAACACAAAAGGgaagggtgaaaaaaaaattgcacaaacATGGTCATGAAATAATAACCATAAGACATACTTCTTAGTAATTAAGAACAAAAAATTCAATGATTAAAATTAAGACAGTAAAACTTTTACAAAAAGCACAATCTTGATTAATACTTTATATTCACTGATTGATGGATAGTGAATATGGGAGTTGGACAGACAGGATGTAATGGGGTGATTTAAAGCCAGTAAACATATGAGGCTCAATCTGAGCGTGCAAAATGTATGGAAAAATACATAAGAATGCACAGCATGAATGATCAGTcactcacacagacagcaaATACTTTGGCAATTCCTTTGTTCACTCTCCTGGTAATGCAATTGCCATGTTTTCTATCTACCTCCATGGCACAATCTTCCCCCTCATGCTCCTTCCTGAGGATGTCCTCCTCAGCCCACTCTCCCACCTCCCTTCCTCTCTGTGCATCATCTCCCGCTCCCTTCTTcgtcgctccctctctctcctctccctcatCCTGCGCTTCTGTTCCCTCACTTCACGTGGTAGGAGTCGGGGCAGCCTGCTCGGTTTCTCTTCCCTTAAAAGCCCTAAAGCCCTCAATCTACACAGGTAATGTGGAGGAAGCTCTTTAAGTATTCGGTTTGCTAAACGCAGCACTAGCGAATTAGCCAGATCTGCTAAAACGCCCAAGGGACGCCGAGCAAAGCGTTTGACCCAAACGTAAACCCAAGACTCATGCTTAGCCTGGAACTCGGTACGTAGGGTCCGGGCAGGAACAGGTATGCGGGAGTGCCTTCCACCACAATTACGTCCTGCTTTGGGAAACATATCAAAGAGGCTGCGCTCAGCCATGCCACCCGTGAGTGACTGGCACAGAGTGAACAGTGGCTTTGGTAGACGGAAAAGCAGACGCACCCAGAATCGGGCAAGCTTTCGGGCGCATTCTGGAGGAAGACACGCGCTGGACGCACCACCAGCACCAACACCAAgtagagagaaaggaagagtgAGGGCGAGCTGAGGAAGAAAGCCGAGATCAGGGCCAAAGGAACGTAATAGAGGCCCAGACTCAGTGCCAGGCCCATACTGAACAGCCCCGATGCCCAGAGCACGAGTGAGAAAaatgcagaaagagagagtgaccAGAGTGAGCGAAGGAATAGgtaagagaaaaagagagccaAGAAGGCTAGCTCAGCTGAAAGAACCAGGGATGCAAGGgagggaagaggaggagagcggCGAAGGGAGAGAAGGAAgatagagaggaagaggagggttGGGAAGGATGGTTTGGCTGctgcagagagggagaggacaAGACATATGGTGTGAGAAAAGAGTGAAGGGATGGATGGTTGAGAACTGGGGGTGCTGGGAGGAGGGCAAATAGGAGGAGGTTCCAGTTCATCTAGAGTGTCAGGGAAGTAGAATTCAGAGAGCTCATCTCGTTGAGGGATTTCAAGAGAAGAGGAAGGGATAAGCTCTGATGGACAGCCATCAGCCACGCCTCTACCCTCTTCTCCCTCTTCCTCAGTCTCTACCTCCGTCTCACTGCTTGCATCCTCCTCCTTATCCCACTGCAGCCCTTCTACTAGTCTTTGATCCCCTAAACCTTTGTCTTCCACTCTCTCCTCCAACTGCCATTCTTTATTCTCTCCCCCCAAATCATGGCACTTCTCCTTCTGCTCatctatgttttcttctttggCATGTTCAAATAGCATAACCTcctcttctgtctctccatcagcctctttctctctgccatGCTCATCTAAAGGCTGCAAATAGCTTCCTTCatCAACTTTTACACTCTCTGCCTCCTGTGCACTCTTTTCCACAGGTGGAGTGTGCGCCCCACAGAACATGCTCCCATCCTCTTCCCTCTCTACTCCCTCAAAAACCTCTTCTGCCCTTTCCTTTACCAGCCCACTGCATGAACTCTCAATCCCTTCCCCATGTCCGTCAGGACCCTCTCCACTGCTCTCTGTGCTGTCACGCTCACTCACTCTTAGGCTCTTTGGCTGCTGACGGACTTCGACAGCATGTTTCTGGCGCAACTCCTGTTCACGCCGCTTGTTGTATTCGAGCTGGTTGGTGAGTTCACTCTGGTGCTGTGTGCGTATCAGCTCTGCCCGAGTTCTCTGCACCAGACCCAGCTGACGCAGCTCTAGCTCTTGTGTGGACTCATGGTGCCGCAGCAGCATTGCACACTCCAGGTCCTTCAGTGTCTGTTTCTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226166 lncRNA downstream 30186 4911734 ~ 4918977 (-) True trnap-cgg_3
TU225963 lncRNA downstream 198286 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 282592 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 352340 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 373633 4573682 ~ 4575530 (-) True G190821
TU226433 lncRNA upstream 430136 5382995 ~ 5387137 (-) True G191279
TU226592 lncRNA upstream 490103 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 529761 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 535958 5488817 ~ 5489111 (-) False gdpd3b
TU226650 lncRNA upstream 713314 5666173 ~ 5667846 (-) True G191463
XM_026915586.2 mRNA downstream 99485 4837911 ~ 4849678 (-) True fam20a
XM_034309628.1 mRNA downstream 121811 4810652 ~ 4827352 (-) False zdhhc16b
XM_026915838.2 mRNA downstream 128578 4810652 ~ 4820585 (-) False zdhhc16b
XM_026915839.2 mRNA downstream 131472 4810652 ~ 4817691 (-) True zdhhc16b
XM_034309184.1 mRNA downstream 161587 4770544 ~ 4787576 (-) True ubtd1b
XM_034309046.1 mRNA upstream 39083 4991942 ~ 4998332 (-) True pagr1
XM_026914518.2 mRNA upstream 106639 5059498 ~ 5063418 (-) True LOC113527048
XM_026914728.2 mRNA upstream 303405 5256264 ~ 5265357 (-) True g6pc3
XM_026914669.2 mRNA upstream 336853 5289712 ~ 5294398 (-) True tmem101
XM_034309110.1 mRNA upstream 359385 5312244 ~ 5322475 (-) True LOC113527073
trnap-cgg_3 other downstream 30191 4918901 ~ 4918972 (-) False trnap-cgg_3
trnap-agg_4 other downstream 31276 4917816 ~ 4917887 (-) True trnap-agg_4
trnap-ugg_13 other downstream 33587 4915505 ~ 4915576 (-) True trnap-ugg_13
trnap-ugg_12 other downstream 34777 4914316 ~ 4914386 (-) True trnap-ugg_12
trnap-ugg_11 other downstream 35966 4913126 ~ 4913197 (-) True trnap-ugg_11
TU226226 other upstream 106668 5059527 ~ 5063395 (-) False LOC113527048
trnai-uau_5 other upstream 349254 5302113 ~ 5302205 (-) True trnai-uau_5
trnav-uac_7 other upstream 520539 5473398 ~ 5473470 (-) True trnav-uac_7
TU226617 other upstream 658261 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 815669 5768528 ~ 5776020 (-) False LOC113527291

Expression Profile