RNA id: XM_026914518.2


Basic Information

Item Value
RNA id XM_026914518.2
length 1471
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC113527048
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5059498 ~ 5063418 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGCGACTTTGAccgctaaaacacacacacacacaagcgctcGCGAAAGCATGGCTGACCAGGAAGGTAAAGGTAAACCTGAAGGCGAGTTTGCCAGGAGGATAGACCCTACCAAGGAGAGTCTGACACGAGAGCAGCTGCAGTTCATCCGGCAAGCGGAACTTGCTCAGTGGAGGAAGAAGAGCCAAAAACTCCGCACCAGAAATGTCATAACTGGACTCGCCATTGGAGCCCTAGTGATGGGAATATATGGGTATACATTCTACTCTGTGTCTCAAGAAAGGATCATGGATGAGATAGATGAAGAAGCAAAGGTGGCTGCCAGGATGCGAAACTCAAAGACTGGAGCGAACTAACTAAAATTAGAATTGGTTGCCAAAAGATGTTTTGCACTGTGGTTTGCACCAATGAAAGgcaaccgtttttttttttttttttttgggcctATTCTCAAATGGCTCCCTGCCTCATCTATAAGTGAACTACATAGAGAATGAAATAATTCTATATCTTTGTTATCAGGCTGCCCATTACTTATTTCTGGAGATGTgcagacgttttttttttccagtacaCTTAGCCTTAATATTCAGATGTCACATAAAGTGTTGATTATGTGTGGTCTATTTTAACAAGTCTAAACTAGGTGTGTATACTAAACACTTGTGTAAAAACTACCATTCCTTGGCTACAAACTACACCATGGGTCTTtagtcttatccacaaaggtTTGACGTACATTTAAaattacggcatttggcagacgcccttatccagagcgttttagattattttcatgtatacagctgagcagttgagggttaaggaccttgctcaagggcccagcagtggcagcttggcagcgCTGGGATTTGAGCTCATGAACTTCCTATCGGTAGTCCATCTTAACCACTGTGGTTTTTCATTCTGATCAAGCAGGAACACACTTTCTGGATAAGGTTGAAGATCCCTGAACTAGTTAGCCTTATTAGAACTGATTATATTATCTAATAAGAACATTAACTAGACATGAATTCTAGTGTTTGAGGTACAGCATAAATTTCCTGGAGCAGAATAGGACTGCAATGAGCCAGTGCAAAACTCTGTCCAGAATGGAGCCATTTGAGACTCAGCAATAGATTCTTCAAGACTACCAGATGCTCCTCTGTTCATTCATGAAGATTTGTATAAGAAAGCCACAGACTGGAAGAACAATTATGTCTTGAATGAAAATTACAGTCAATAATTGTGAGGAAATTGAATCAATGTACCACAAGAGGGCACTGCTAAACCTTCTGCTCCATGGAAAGTGAGTGTTCTCTGACACAGGGTTCAGCGCTGCATagacctttggccatataatggaaaaaaatgttgatgaaAAGTTTAAATGGTAAATAATATTAAGCTgtaaaggttttgttttttgcaaccTAAATAAATGTCTGATATTTGCCATATCTTGCAAA

Function

GO:

id name namespace
GO:0070131 positive regulation of mitochondrial translation biological_process
GO:0033617 mitochondrial cytochrome c oxidase assembly biological_process
GO:0031305 integral component of mitochondrial inner membrane cellular_component

KEGG:

id description
K18175 CCDC56, COA3; cytochrome c oxidase assembly factor 3, animal type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226166 lncRNA downstream 140521 4911734 ~ 4918977 (-) True trnap-cgg_3
TU225963 lncRNA downstream 308621 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 392927 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 462675 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 483968 4573682 ~ 4575530 (-) True G190821
TU226433 lncRNA upstream 319577 5382995 ~ 5387137 (-) True G191279
TU226592 lncRNA upstream 379544 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 419202 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 425399 5488817 ~ 5489111 (-) False gdpd3b
TU226650 lncRNA upstream 602755 5666173 ~ 5667846 (-) True G191463
XM_034309046.1 mRNA downstream 61166 4991942 ~ 4998332 (-) True pagr1
XM_026915586.2 mRNA downstream 209820 4837911 ~ 4849678 (-) True fam20a
XM_034309628.1 mRNA downstream 232146 4810652 ~ 4827352 (-) False zdhhc16b
XM_026915838.2 mRNA downstream 238913 4810652 ~ 4820585 (-) False zdhhc16b
XM_026915839.2 mRNA downstream 241807 4810652 ~ 4817691 (-) True zdhhc16b
XM_026914728.2 mRNA upstream 192846 5256264 ~ 5265357 (-) True g6pc3
XM_026914669.2 mRNA upstream 226294 5289712 ~ 5294398 (-) True tmem101
XM_034309110.1 mRNA upstream 248826 5312244 ~ 5322475 (-) True LOC113527073
XM_026915784.2 mRNA upstream 341764 5405182 ~ 5416607 (-) True sgca
XM_034309354.1 mRNA upstream 383054 5446472 ~ 5456359 (-) True lrrc45
TU226185 other downstream 106639 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 140526 4918901 ~ 4918972 (-) False trnap-cgg_3
trnap-agg_4 other downstream 141611 4917816 ~ 4917887 (-) True trnap-agg_4
trnap-ugg_13 other downstream 143922 4915505 ~ 4915576 (-) True trnap-ugg_13
trnap-ugg_12 other downstream 145112 4914316 ~ 4914386 (-) True trnap-ugg_12
trnai-uau_5 other upstream 238695 5302113 ~ 5302205 (-) True trnai-uau_5
trnav-uac_7 other upstream 409980 5473398 ~ 5473470 (-) True trnav-uac_7
TU226617 other upstream 547702 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 705110 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 1484653 6548071 ~ 6594390 (-) False itga3b

Expression Profile