RNA id: TU226433


Basic Information

Item Value
RNA id TU226433
length 2784
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G191279
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5382995 ~ 5387137 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gaagagaagagaagagaagagaagggtagggaagggaaggaaagaaaagaaaagagaagaagggaagagaagagaagagaagagatgaaCAATGGTGTCATACTGGTGGTCCAGGAAGAGCTGGGCCGCTGGATTTCTCACTACCATAAGACAGCTGGGGCAAGTTGTACtgcaaaagaacaaacaaaagttATAAATTAAAAGCTATAATAATCCGTCCATTACGCCTTCAACATGTCTCTGTGCATCCCACTACTTTGGTTTAGATCACAGGTTAGCATTTAGACTAAAATGATTTCGATTTGATTTGCTGAAATTTCTCCCTCACAGCGTCAGTATTACTATTCTTTATACTATTTactattttcatattcatacattttctCTAGTTGGAGTTTCTTCACATTGTCACTGGTGTCACACGCTGCTCATgtgatgtgtataaatatacaaCACTCAGTGCTTCTACACATAAAGAGTTAAAGCTGCTCTCCATCTTAGTGGTACTGATTTACAGGGAATTCATGGGAAAATGGTGGAGTTGGTTTCCTTGGCTGTCTTGGTGTGACATGATAGAATCacttaacagaaaaaaaatctccaatTCTAAACCACATGTCCTTTGTGATAATTCCTGGTATCTCTGTTAATCACAAATTCAGGTGCGAAACCTGATGACACGTACTTTCCTAtgaattacttttaatttatgtGTTAAGAGATTTTACATTGCCGCATCAGATTCCCATTAGCACATGATATAAACCCGATCTTTCCTGCTAACTAGATGCTGTAGTCCACTGTAAGTTTTAAAGTAATGTGTTGGATTTTGTGTTTGAGCCACATGGCATAAGGACACTGTCCTCATGATGTCTTAAACATGCATGGGTTTGCTTTTCACAGCTTTATCTGTGGAAAATTTATAAAGTGATGTACTCACTCCACCGAGACCAGGGGGTCCAGGGGGGCCAGGAGGTCCAGGAAGTCCAGGCTCTCCGGGAATGCCATCGTTTCCGGCAGGTCCAACGGGACCCTGTCAAACCAAAGCACAATTTATATTagaaatacataaatgtattaaacGCTTAGCAACAGCCAGTCCACCTCTTACAGTGCAGTTGCAAGACACAGAAAATGATGAtacgaaataaaaaaaattaatctatAAATTTTGATATGTTATAAATAGATatacttaatattaatatgttataaatagaataaaataaatagaaagttGTTAAAGGTCATACATTAAATTTAATGTGGCAAAGGTCAAAGTTGACACAGGTCATAAGGTCATAAGGTTACAAAATAATTTTGCCATTATTTTGGCAACAGAGGATCTGTATAATTTCTTCACTCAAAATAACTGTATAACCTCCATAACCTATGGTTTATATAAACaactgtttctgtgtttcttgttgcatttattaaatatttaacatttcacCAAAATGTGTCTGGATAACCTTTATCATTTGACACAAccgaaaaaaaaattataaaagcaaattaaattaacaaGGCCAACATAACCACGACCTTAAAGCAATACACAACCATATCAAAGGaagacaggaagaggaaaatGGTGCTTACCGGGTCACCCTTAGGTCCAGTGGGACCTTTGGGTCCAAAATtctaaaaatacatacatatatttatataattgtacctcaaaaatataacttttacaaacaatatgatatttatatatatataaacaatatatatatatatttaaactaaagtggatgtgatttttttttcatttgtacacaaattattttattatctatctatatttaaaaatttgtcattttacacaaaattatatacaaaattATGAAGAATATATGACTAAGGTATGTGTTGAGTGTAAGCTGGTATTGTTACTGACCTCAGGACTATCAGTGGTTGGTGTTTCTGTGCctgagaaatgaaataaaaatcaaaattagTCCTTTGCCTGTCTATAATCAAGTGTTTTGGACACATATTCTCtatcattatgtattttttcattatGACTGGCCCAAGATAACGGATGAAACACTCTTTgatcatgaaaaaaaagtgttccaCTGTGTTCCCTTTCACGAAATCAATAACTGCCAAACACTGATCATTCCAAACGTAATCTTAATCCAGTGTGAAAATAGATCCGCAGAAGCGCCCTCCCAGACTGTGCTCCCTTCCAGCAGGACGGCCATCGGAGGAGAGACACCTCACTGGGTTTTAATATTTCCGAGCTCAGGTAAAGAGACAAGTCTGCTAGAGGGCGACATAAAACTAGCACGTCTGCGAGCGAGTGAGTGGTGATGTGGCAAATATACCGTCGATGCAAATAGGGCAGCATTCGCCTTCGGGGATTTCTGGGTTGGCGCAGTCCGGTATGTCCTCGCAGATCACCTCGTCGCACATGACAGTTCCGCTGTCGCACACGCAAATCCGGCATGGCTCAGGTTTCCATACGTCCTTGTCATTGTACGACTGGCCGTCTAATGTGCAGCTACTGAATATGCCTACGAATGAAAGACTGTCATCCTCGCCCTGTCCTCTCGCCACGAGCGCGGCGGCCGCGAGCAGCAGCCCTAACCGGATATCCACAAAGCTGAACATGTCTAAATGTTAGACATGTAGACTCTTTGAGGCGAGAGTGTTGTGTCTTTAGTTCCCGCAGGCGCCGATCATACACGTCGAGGTTATAACTCCAAACCCagaccccaacacacacacacacactccctactgcccaaacacacacctcatccCGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226166 lncRNA downstream 464018 4911734 ~ 4918977 (-) True trnap-cgg_3
TU225963 lncRNA downstream 632118 4701104 ~ 4750877 (-) True G190885
TU225914 lncRNA downstream 716424 4666312 ~ 4666571 (-) True G190849
TU225890 lncRNA downstream 786172 4596539 ~ 4596823 (-) True G190829
TU225878 lncRNA downstream 807465 4573682 ~ 4575530 (-) True G190821
TU226592 lncRNA upstream 55825 5442962 ~ 5445167 (-) True G191413
TU226604 lncRNA upstream 95483 5482620 ~ 5484667 (-) True G191424
TU226605 lncRNA upstream 101680 5488817 ~ 5489111 (-) False gdpd3b
TU226650 lncRNA upstream 279036 5666173 ~ 5667846 (-) True G191463
TU226652 lncRNA upstream 280747 5667884 ~ 5669753 (-) True G191464
XM_034309110.1 mRNA downstream 60520 5312244 ~ 5322475 (-) True LOC113527073
XM_026914669.2 mRNA downstream 88597 5289712 ~ 5294398 (-) True tmem101
XM_026914728.2 mRNA downstream 117638 5256264 ~ 5265357 (-) True g6pc3
XM_026914518.2 mRNA downstream 319577 5059498 ~ 5063418 (-) True LOC113527048
XM_034309046.1 mRNA downstream 384663 4991942 ~ 4998332 (-) True pagr1
XM_026915784.2 mRNA upstream 18045 5405182 ~ 5416607 (-) True sgca
XM_034309354.1 mRNA upstream 59335 5446472 ~ 5456359 (-) True lrrc45
XM_026915826.2 mRNA upstream 97554 5484691 ~ 5490925 (-) True gdpd3b
XM_026914514.2 mRNA upstream 115286 5502423 ~ 5509397 (-) True prodh2
XM_026915248.2 mRNA upstream 125630 5512767 ~ 5526387 (-) True eif3c
trnai-uau_5 other downstream 80790 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 319600 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 430136 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 464023 4918901 ~ 4918972 (-) False trnap-cgg_3
trnap-agg_4 other downstream 465108 4917816 ~ 4917887 (-) True trnap-agg_4
trnav-uac_7 other upstream 86261 5473398 ~ 5473470 (-) True trnav-uac_7
TU226617 other upstream 223983 5611120 ~ 5613954 (-) True G191430
TU226699 other upstream 381391 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 1160934 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 3071190 8458327 ~ 8458396 (-) True trnap-agg_9

Expression Profile