RNA id: TU226560


Basic Information

Item Value
RNA id TU226560
length 239
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G191386
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5671014 ~ 5671252 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTACACAGTTACTTGAAAATATAGTAATATTCACTCATTTTTTATGAAATTGCCTTACctgaataatattattatgcatttgcattattattagaaaaatgGTATTTTAGCTTCCAGGCTTACATAGGTGAAGACCCTACAACACTGGTTCCCAAACTTTCTGAGGAAacgaccccaaatggacattatgaattttctgggaccccaagccttgaccaccctacaattttttaaattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226549 lncRNA upstream 3412 5596722 ~ 5667602 (+) True G191375
TU226496 lncRNA upstream 51906 5614407 ~ 5619108 (+) True G191329
TU226475 lncRNA upstream 157859 5512691 ~ 5513155 (+) True G191310
TU226427 lncRNA upstream 288205 5382597 ~ 5382809 (+) True G191273
TU226421 lncRNA upstream 304656 5366136 ~ 5366358 (+) True G191267
TU226561 lncRNA downstream 890 5672142 ~ 5672495 (+) True G191387
TU226663 lncRNA downstream 51577 5722829 ~ 5723604 (+) True G191472
TU226687 lncRNA downstream 68912 5740164 ~ 5740905 (+) False LOC113527671
TU226695 lncRNA downstream 101648 5772900 ~ 5776010 (+) True G191497
TU226794 lncRNA downstream 235212 5906464 ~ 5908176 (+) True G191568
XM_026914970.2 mRNA upstream 5047 5626391 ~ 5665967 (+) True LOC113527309
XM_026914933.2 mRNA upstream 171269 5494906 ~ 5499745 (+) True tbx6
XM_026915824.2 mRNA upstream 186337 5477331 ~ 5484677 (+) False nif3l1
XM_026915825.2 mRNA upstream 186337 5477475 ~ 5484677 (+) True nif3l1
XM_034309633.1 mRNA upstream 186337 5477746 ~ 5484677 (+) False nif3l1
XM_026915490.2 mRNA downstream 10789 5682041 ~ 5689581 (+) True mapk7
XM_026915697.2 mRNA downstream 58902 5730154 ~ 5740896 (+) True LOC113527671
XM_026914736.2 mRNA downstream 75621 5746873 ~ 5766384 (+) True mmp25b
XM_026914737.2 mRNA downstream 75621 5746873 ~ 5766384 (+) False mmp25b
XM_026915189.2 mRNA downstream 269697 5940949 ~ 5964560 (+) True kansl1a
TU226411 other upstream 330451 5337253 ~ 5340563 (+) False LOC113527051
TU225934 other upstream 831645 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 1075901 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 1237702 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1888519 3782131 ~ 3782495 (+) False rasd1
TU226808 other downstream 298491 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 544593 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 545115 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 551465 6222717 ~ 6222798 (+) True trnal-uag
trnas-gcu_2 other downstream 552284 6223536 ~ 6223617 (+) True trnas-gcu_2

Expression Profile