Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU226605 |
| length | 200 |
| lncRNA type | sense_over |
| GC content | 0.45 |
| exon number | 2 |
| gene id | gdpd3b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 5484691 ~ 5490925 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU226604 | lncRNA | downstream | 4150 | 5482620 ~ 5484667 (-) | True | G191424 |
| TU226592 | lncRNA | downstream | 43650 | 5442962 ~ 5445167 (-) | True | G191413 |
| TU226433 | lncRNA | downstream | 101680 | 5382995 ~ 5387137 (-) | True | G191279 |
| TU226166 | lncRNA | downstream | 569840 | 4911734 ~ 4918977 (-) | True | trnap-cgg_3 |
| TU225963 | lncRNA | downstream | 737940 | 4701104 ~ 4750877 (-) | True | G190885 |
| TU226650 | lncRNA | upstream | 177062 | 5666173 ~ 5667846 (-) | True | G191463 |
| TU226652 | lncRNA | upstream | 178773 | 5667884 ~ 5669753 (-) | True | G191464 |
| TU226656 | lncRNA | upstream | 199483 | 5688594 ~ 5689568 (-) | True | G191468 |
| TU226688 | lncRNA | upstream | 250867 | 5739978 ~ 5740199 (-) | True | G191490 |
| TU226700 | lncRNA | upstream | 279417 | 5768528 ~ 5776020 (-) | False | LOC113527291 |
| XM_034309354.1 | mRNA | downstream | 32458 | 5446472 ~ 5456359 (-) | True | lrrc45 |
| XM_026915784.2 | mRNA | downstream | 72210 | 5405182 ~ 5416607 (-) | True | sgca |
| XM_034309110.1 | mRNA | downstream | 166342 | 5312244 ~ 5322475 (-) | True | LOC113527073 |
| XM_026914669.2 | mRNA | downstream | 194419 | 5289712 ~ 5294398 (-) | True | tmem101 |
| XM_026914728.2 | mRNA | downstream | 223460 | 5256264 ~ 5265357 (-) | True | g6pc3 |
| XM_026914514.2 | mRNA | upstream | 13312 | 5502423 ~ 5509397 (-) | True | prodh2 |
| XM_026915248.2 | mRNA | upstream | 23656 | 5512767 ~ 5526387 (-) | True | eif3c |
| XM_026915602.2 | mRNA | upstream | 39538 | 5528649 ~ 5539726 (-) | False | ppp4cb |
| XM_026915603.2 | mRNA | upstream | 39538 | 5528649 ~ 5539545 (-) | True | ppp4cb |
| XM_034309298.1 | mRNA | upstream | 51775 | 5540886 ~ 5545885 (-) | False | si:ch211-136m16.8 |
| trnav-uac_7 | other | downstream | 15347 | 5473398 ~ 5473470 (-) | True | trnav-uac_7 |
| trnai-uau_5 | other | downstream | 186612 | 5302113 ~ 5302205 (-) | True | trnai-uau_5 |
| TU226226 | other | downstream | 425422 | 5059527 ~ 5063395 (-) | False | LOC113527048 |
| TU226185 | other | downstream | 535958 | 4949163 ~ 4952859 (-) | True | G191056 |
| trnap-cgg_3 | other | downstream | 569845 | 4918901 ~ 4918972 (-) | False | trnap-cgg_3 |
| TU226617 | other | upstream | 122009 | 5611120 ~ 5613954 (-) | True | G191430 |
| TU226699 | other | upstream | 279417 | 5768528 ~ 5776020 (-) | False | LOC113527291 |
| XR_004579320.1 | other | upstream | 1058960 | 6548071 ~ 6594390 (-) | False | itga3b |
| trnap-agg_9 | other | upstream | 2969216 | 8458327 ~ 8458396 (-) | True | trnap-agg_9 |
| trnal-uag_3 | other | upstream | 2986148 | 8475259 ~ 8475340 (-) | True | trnal-uag_3 |
