RNA id: TU226617


Basic Information

Item Value
RNA id TU226617
length 2815
RNA type TUCP
GC content 0.36
exon number 2
gene id G191430
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5611120 ~ 5613954 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCATAGCCAATTATGTTAGTCACTAGAATCGAttctagtctaacctggcattaccAATGAAAACAGGCTAATTTAGTTAAATATAActagttattatttaaattagcaAAAGAGCTAATGTAGCTATAGAGTTGGTACTGCATTGTGTGGCATGAAAACTCACTGCAGACAACAATTGGGGTGATTCTTGAGTTTTTGTCTACATTAATGAATTTAATTGGACGGGTCAGTGGagtagtggttaggcctcagcattctcactgctgcagcctgggtttgattcccagctAGGGAACCAAGACATCCGATGTAAaaattgtgccaaatcaaatatgtggaccaatgatcagCTGTAATGACCCCCAtccgggagcagccaaaagaagaacagCACTGAATTTAATTGGATGCTTTGAAATGAAATGGCTGGATTCTAAACTCCACCCATTCAGTGTACAGACATTAGTTGGCtaagagaagaaataaaagtaagttttttttcttggaaatgtaattaagaaaGAATATAAGCATTCAAATTCAATAACACTTGTCAAGTATAAATACAAAGTAAAATTACTCAAATATCTTCCACCCCTGGGTATGATTATGGGAATTTAGAATAAAATTACAGTCACCTGACTGAATTTTACTGATTTtgaaacatacactatatggccaaaagtatgtggacacctgaccaatcacgtCCCAtttgcttgctgaacatcccatttaaGATTcattccctctttgctgtttcAATAATCttcactcttctgagaaggctttccactaaatcttggagtgtagctgtggctatttgcccattcagccacaaaagcattagtaaGGTCAGGCACATCTtgggcaagaaggcctggcgCATAGTTGGTGTGTcaattcatctcaaaggtgttctctatgcaggCACCCTCAAGTTcatccactccaactttggcaaaccatgtcttcatggagattactttgtgcacagggcattgtcatgtttgAACAGGATTGGACCTGTTAGTTTGAGGAAGGCTCACATGTGGGTATGAttgtcagatgtccacatatttttggccatatagtgtatttatagaAATTTTACATACAATGAGGTACAGGGTTTTTCAGTGGTGTCTAGACCACTAACTTTTAGTAAAAGtacttgtttttaaatctgatgaaactggattttctgaaaaaaaaaacaaaaaaaaaaacacagacacagggaaaacatgcacATTATGCATTGTGTTCATTCCTTTTTAGCTCTGTAAGATCATATTCAGTTTCTGTGTGCTCTTACTAGGTATATTCTTCTGCCTGTTTGCCCTGCACATATCATTTACTGCACTACACTTCCTGTAGAGTTTGAGGGGCTGGTAAAGGACAGCTAAAAAAGACTGTGTGGGTGAGTAGGTCATCACAAATGGAAATTTTGAGTGTAAAGTGACAACCCATCTCACCACCTCTGCCACTTGAAACCAgagggggattttttttttttttttgcatgatgtCTGTTCATTTTCACTTTATGGCAGTGTAGAAACCATTTGTATCTATGGATTTTCTTTCCACTGtcgatatatttttttatgatttccaCTAAAACTAGTAAACTCTGTAAAATTTGGAATCACTTAAACTCTATTCAAAGCAAAGATTATAAGCAgcattttttattgtgttatcCAATATaacccagaagaggacgggttccttttgaatctggttcctttCAAAGTTTCTTCATCCCAGGGAATTTTCCTTGCCCTTTCTTGCCACCTCTGACTCATTCTTTCGTGATTTAAATTTACAGTCAAGCTAATGGTGTGAACTACAACCGCTCACCAGAGACACCAATCATCTCTGCGACTTTTATTCCAAATATTATggttcttcataatgtctctatacacatttaatgagaagtTGTATTTGACAGGATacgatgacattttttttattcccttttttcCAGTCTTGCAGCACAAAGGAACAAATTGCAGGAGAGAGCTAAAGTTGTGAGAGGGGGAATGAAAAGCTATTCGAGCCATTCTAGCATGAGcagttttccactagattttggaacctggctgtggggatttgcacaTTCCACAAaagcatttgtgaggtcaggaaCTGATTTCGAGTGAGGAGATCTGGAGCATAGTCTGCGATTCCAATTCATCTCAAAGtggttcagtggagttgaggccAACTCAAGtgcttccactccaaccttgtaTAATGTCAAGATTGTGGTCCAAAGATCTAGATCCAATtctaagaaatattttttttcattcagttaagaaagaaaataataaatttttcaaattatttaaataaatttctccAATAAATCATCAGTGTTCACAATACTATTACAATACTGTTAGacttttcactctttttctacagtaatatactgtaatcaGCCTTTCTGGTATGTTACTACAGACTTGTATATTTACTGTCTTCAAgtaattattttctatattacTATGGTTAAAGCTGATGTTTGCTTACTGTTTATTctggtgtgaattttttttttttatttctgaacaaaCTATCATCAGTGGTCACCCTGTAACTCAAGTCACAAATACCCCAAATGTATCTAATAAATAGAATTGTACGACAATTAGTtatggtccactaatttgattggttgaccAGCATTCCAAgtgtgcttatatttagtattcaATTTAACAGACATCATCACAAATCAGATTTACCgaaataaatgcattcaaaatataaattttaaatgtataaatttatccctaat

Function

GO:

id name namespace
GO:0072330 monocarboxylic acid biosynthetic process biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:0046031 ADP metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006090 pyruvate metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0006096 glycolytic process biological_process
GO:1901292 nucleoside phosphate catabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009108 obsolete coenzyme biosynthetic process biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0046939 nucleotide phosphorylation biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0006733 obsolete oxidoreduction coenzyme metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0019359 nicotinamide nucleotide biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0019362 pyridine nucleotide metabolic process biological_process
GO:0019363 pyridine nucleotide biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0009132 nucleoside diphosphate metabolic process biological_process
GO:0009135 purine nucleoside diphosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006757 ATP generation from ADP biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:0042866 pyruvate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0072524 pyridine-containing compound metabolic process biological_process
GO:0072525 pyridine-containing compound biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0046434 organophosphate catabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0009179 purine ribonucleoside diphosphate metabolic process biological_process
GO:0009185 ribonucleoside diphosphate metabolic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0034655 nucleobase-containing compound catabolic process biological_process
GO:0046496 nicotinamide nucleotide metabolic process biological_process
GO:0016052 carbohydrate catabolic process biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0036379 myofilament cellular_component
GO:0005861 troponin complex cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226605 lncRNA downstream 122009 5488817 ~ 5489111 (-) False gdpd3b
TU226604 lncRNA downstream 126453 5482620 ~ 5484667 (-) True G191424
TU226592 lncRNA downstream 165953 5442962 ~ 5445167 (-) True G191413
TU226433 lncRNA downstream 223983 5382995 ~ 5387137 (-) True G191279
TU226166 lncRNA downstream 692143 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226650 lncRNA upstream 52219 5666173 ~ 5667846 (-) True G191463
TU226652 lncRNA upstream 53930 5667884 ~ 5669753 (-) True G191464
TU226656 lncRNA upstream 74640 5688594 ~ 5689568 (-) True G191468
TU226688 lncRNA upstream 126024 5739978 ~ 5740199 (-) True G191490
TU226700 lncRNA upstream 154574 5768528 ~ 5776020 (-) False LOC113527291
XM_026915644.2 mRNA downstream 38231 5555957 ~ 5572889 (-) True si:ch211-180a12.2
XM_034309296.1 mRNA downstream 56213 5545841 ~ 5554907 (-) False LOC117598535
XM_034309294.1 mRNA downstream 56214 5545841 ~ 5554906 (-) False LOC117598535
XM_034309295.1 mRNA downstream 56215 5545841 ~ 5554905 (-) False LOC117598535
XM_034309293.1 mRNA downstream 56216 5545841 ~ 5554904 (-) True LOC117598535
XM_026915836.2 mRNA upstream 476 5614430 ~ 5618990 (-) True aldoab
XM_026915461.2 mRNA upstream 60770 5674724 ~ 5677961 (-) True vkorc1
XM_034309612.1 mRNA upstream 78166 5692120 ~ 5709289 (-) False zgc:92313
XM_034309610.1 mRNA upstream 78166 5692120 ~ 5709267 (-) False zgc:92313
XM_034309609.1 mRNA upstream 78166 5692120 ~ 5708888 (-) False zgc:92313
trnav-uac_7 other downstream 137650 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 308915 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 547725 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 658261 4949163 ~ 4952859 (-) True G191056
trnap-cgg_3 other downstream 692148 4918901 ~ 4918972 (-) False trnap-cgg_3
TU226699 other upstream 154574 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 934117 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2844373 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2861305 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 3233708 8847662 ~ 8857748 (-) False si:dkey-94l16.4

Expression Profile