RNA id: TU226650


Basic Information

Item Value
RNA id TU226650
length 1643
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G191463
representative True

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5666173 ~ 5667846 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ttatattatatattatattatcggACTTGCagcccaaaggtgaacctgaaggtcgtgggttcgagtctcaggtcctgcagggattgtaggtgggaggagtgaatgaccagctctctcccaccctcaataccatgactgaggtgagacccttgagcaaggcaccgaacccccaactacTCCCCAGGCGCCGcggcaaaaaaggctgcccactgctccgggtgtgtgttcacggtgtgtgtgtgtgttcactactgtgtgtgtgcaattggataggttaaatgcagagcacaaattccgagtatgggtcaccatacttggccacaagtcacttcactaaaaaggaagtgaaaaacaatcagaaacattttagggaaaaataggaaaaataaaaaacttacaataacctggttgcataaatgtgcacacccttttataattgggaatgtcgctgtgttcagaatcaaccaatcacattcaatctcatgttaaaaagtaattatcatacagatgtcatcaatgaaattattctgattaactccaaataaagaccagctgtttctataggattttcttcacatcttcttggtttcatctgacttctgaagccatggtctgcaaagagcttacaaagcatgtacagggtcccactgtcgaaaggtattgatcaggagagaggtacaaaaaaatttccaaaacattagatgtaccatggaatactgtgaaggccatcatcaacaagttgAGAAagtggagcaccacagtgacatcaaccagaacaggatgtccctccaaaatttataaaaggccATGACATAAACTTACCAGGGAGATTGGCAAGAGacctacagaaacaataaaggagctgcaggaatatctaacaagtactgattactctttgcatgtgacaacaatctctcataatcttcacatgtctgggctatggggtagcgTGGCTacatggaagccctttctcacaaaaaaacttacaagcacaactaaatcaccccaactatgtggcaaaatgtgttatggtctgatgagacaaatTACAAAAGGTATAATTATTctataattccaaaaggtatgtttggtgcaaaacaaaaatcacttcaccaaaagaacaccacgttgaagcatggtggtggcagcatcatgctttagggctgcttttcttcagccagaactggggcttttatcaaggtggagggaatcatgaatagctacaaataccagtcgattgtagtgcaaaacctttaggtgtctgctagtaagctgaagatgaaaaggaatttccccttttagcatgacaatgacccaaagcatacatgcaaatcaacaaaggaatggcttaaccaaaagaagatcaatgtttttgaatggcctagccagagcccagacctgaatccaactaaaaatctgtggggtgacctgaagcgggctgtgcgcAGGAGATGCCTTTACAATTtaatggatctagaatgtttttgcaagaaagagtgagaaaatattgccaagtcaagatgtgccatgctgacagacaattagccaaaaagactgagtggtgtaatataatcaaaaggtgcttcaataaagtattagtttaggggtgtgcacacttatgaattcaggttgttgtaagtttt

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226605 lncRNA downstream 177062 5488817 ~ 5489111 (-) False gdpd3b
TU226604 lncRNA downstream 181506 5482620 ~ 5484667 (-) True G191424
TU226592 lncRNA downstream 221006 5442962 ~ 5445167 (-) True G191413
TU226433 lncRNA downstream 279036 5382995 ~ 5387137 (-) True G191279
TU226166 lncRNA downstream 747196 4911734 ~ 4918977 (-) True trnap-cgg_3
TU226652 lncRNA upstream 38 5667884 ~ 5669753 (-) True G191464
TU226656 lncRNA upstream 20748 5688594 ~ 5689568 (-) True G191468
TU226688 lncRNA upstream 72132 5739978 ~ 5740199 (-) True G191490
TU226700 lncRNA upstream 100682 5768528 ~ 5776020 (-) False LOC113527291
TU226871 lncRNA upstream 267693 5935539 ~ 5938163 (-) True LOC113527731
XM_026915836.2 mRNA downstream 47183 5614430 ~ 5618990 (-) True aldoab
XM_026915644.2 mRNA downstream 93284 5555957 ~ 5572889 (-) True si:ch211-180a12.2
XM_034309296.1 mRNA downstream 111266 5545841 ~ 5554907 (-) False LOC117598535
XM_034309294.1 mRNA downstream 111267 5545841 ~ 5554906 (-) False LOC117598535
XM_034309295.1 mRNA downstream 111268 5545841 ~ 5554905 (-) False LOC117598535
XM_026915461.2 mRNA upstream 6878 5674724 ~ 5677961 (-) True vkorc1
XM_034309612.1 mRNA upstream 24274 5692120 ~ 5709289 (-) False zgc:92313
XM_034309610.1 mRNA upstream 24274 5692120 ~ 5709267 (-) False zgc:92313
XM_034309609.1 mRNA upstream 24274 5692120 ~ 5708888 (-) False zgc:92313
XM_034309608.1 mRNA upstream 24274 5692120 ~ 5708888 (-) False zgc:92313
TU226617 other downstream 52219 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 192703 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 363968 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 602778 5059527 ~ 5063395 (-) False LOC113527048
TU226185 other downstream 713314 4949163 ~ 4952859 (-) True G191056
TU226699 other upstream 100682 5768528 ~ 5776020 (-) False LOC113527291
XR_004579320.1 other upstream 880225 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2790481 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2807413 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 3179816 8847662 ~ 8857748 (-) False si:dkey-94l16.4

Expression Profile