Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU226687 |
| length | 742 |
| lncRNA type | sense_over |
| GC content | 0.33 |
| exon number | 1 |
| gene id | LOC113527671 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047606.1 |
| NCBI id | CM018552.1 |
| chromosome length | 26563515 |
| location | 5730154 ~ 5740905 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU226663 | lncRNA | upstream | 16560 | 5722829 ~ 5723604 (+) | True | G191472 |
| TU226561 | lncRNA | upstream | 67669 | 5672142 ~ 5672495 (+) | True | G191387 |
| TU226560 | lncRNA | upstream | 68912 | 5671014 ~ 5671252 (+) | True | G191386 |
| TU226549 | lncRNA | upstream | 72562 | 5596722 ~ 5667602 (+) | True | G191375 |
| TU226496 | lncRNA | upstream | 121056 | 5614407 ~ 5619108 (+) | True | G191329 |
| TU226695 | lncRNA | downstream | 31995 | 5772900 ~ 5776010 (+) | True | G191497 |
| TU226794 | lncRNA | downstream | 165559 | 5906464 ~ 5908176 (+) | True | G191568 |
| TU226819 | lncRNA | downstream | 199716 | 5940621 ~ 5940847 (+) | True | G191588 |
| TU226822 | lncRNA | downstream | 205320 | 5946225 ~ 5948586 (+) | True | G191591 |
| TU226826 | lncRNA | downstream | 260163 | 6001068 ~ 6055205 (+) | True | G191595 |
| XM_026915490.2 | mRNA | upstream | 50583 | 5682041 ~ 5689581 (+) | True | mapk7 |
| XM_026914970.2 | mRNA | upstream | 74197 | 5626391 ~ 5665967 (+) | True | LOC113527309 |
| XM_026914933.2 | mRNA | upstream | 240419 | 5494906 ~ 5499745 (+) | True | tbx6 |
| XM_026915825.2 | mRNA | upstream | 255487 | 5477475 ~ 5484677 (+) | True | nif3l1 |
| XM_026914736.2 | mRNA | downstream | 5968 | 5746873 ~ 5766384 (+) | True | mmp25b |
| XM_026914737.2 | mRNA | downstream | 5968 | 5746873 ~ 5766384 (+) | False | mmp25b |
| XM_026915189.2 | mRNA | downstream | 200044 | 5940949 ~ 5964560 (+) | True | kansl1a |
| XM_026915142.2 | mRNA | downstream | 282862 | 6023767 ~ 6061324 (+) | True | scn4aa |
| XM_026915143.2 | mRNA | downstream | 282862 | 6023767 ~ 6061324 (+) | False | scn4aa |
| TU226411 | other | upstream | 399601 | 5337253 ~ 5340563 (+) | False | LOC113527051 |
| TU225934 | other | upstream | 900795 | 4755097 ~ 4839369 (+) | False | G190865 |
| TU225847 | other | upstream | 1145051 | 4593107 ~ 4595113 (+) | False | lrrc18b |
| trnae-cuc_25 | other | upstream | 1306852 | 4433241 ~ 4433312 (+) | True | trnae-cuc_25 |
| TU225438 | other | upstream | 1957669 | 3782131 ~ 3782495 (+) | False | rasd1 |
| TU226808 | other | downstream | 228838 | 5969743 ~ 5983237 (+) | True | G191581 |
| trnas-gcu_1 | other | downstream | 474940 | 6215845 ~ 6215926 (+) | True | trnas-gcu_1 |
| trnal-aag_2 | other | downstream | 475462 | 6216367 ~ 6216448 (+) | True | trnal-aag_2 |
| trnal-uag | other | downstream | 481812 | 6222717 ~ 6222798 (+) | True | trnal-uag |
| trnas-gcu_2 | other | downstream | 482631 | 6223536 ~ 6223617 (+) | True | trnas-gcu_2 |
