RNA id: XM_026915697.2



Basic Information


Item Value
RNA id XM_026915697.2
length 2427
RNA type mRNA
GC content 0.41
exon number 8
gene id LOC113527671
representative True

Chromosome Information


Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5730154 ~ 5740905 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence


tccttctcttgcTGCGAGGACATAAGTGCCCGCAGACGCAATTCTCTATGGAGCCCTCCCTCCATCTCACTCTCTTCCACTCCGTCtaactctctccatctctctctctctctctctctctctctcttccattcTTTGCCCTGCTATCTCACCCTCTATCTTACAAACATACAGTCCATTGTCAACAAACAGAACAAGCAGGATAAAACTCCTGTGTTTTATGAAGAGCAATGACTTTGGCATCACACTCCATGATGTCTTGTGCATAAATCAACATTTGGTTAAAGGGTTTAGTGTATGATGCATGAGAAGTTAACAATGCTGAATTTGCAAAGTAGTTCAAATTGGAACATGCCTAATGACTGGTACCATCAGCAGAACACTGCTGCCACCCATCACAGTACAGTGTCCAATGGCTGCATGGTGGACACAGACATAGGGATGGGGACAGGAGGAGGAAGAGTGCAGATGGAGAGGGACGACAGTGAAGAATCACAGCTGCGGCTGCAGCTGAAGAGGAAACTGCAGAGGAACAGGACTAGCTTTACTCAGGAGCAGATTGAGGCTCTGGAGAAAGAATTTGAGAGGACACACTACCCTGACGTCTTTGCACGAGAACGTCTAGCAAATAAAATAGACCTCCCAGAAGCACGGATCCAAGTGTGGTTTTCCAACCGAAGAGCCAAATGGAGACGAGAAGAGAAGCTGCGCAACCAGAGGAAATCTGGGGGTGGAACTTCATGCACCCAAACACATACTCCGCTTAGCACTTCCTTTAACTCTGCCCTCTATCAGCAGCACAGCAACAGTGCAGgCTCCATGATCAATCAAAGTGAGACAACTCTCCCTAGTTACAGTTCCCTCTCTGTCTATTCTGGAGTACAgTCGGCCCCCTCATATCCTTGCATGCTGCCCCCTTCCCCTTCTGCCCCACAATCCTTTGAGCCTTCTTCTTACCCCTCCCCCCACCTCCCAGGCCCGCCTACTGGAAACACCAGCACAGgtttGATCTCTCCAGGCATTTCAGTACCGGTCCAGGTCCCAGGGAATGAGCAGAACATGGGCCAGAACTTGGGCCAGTACTGGGCTCGACTGCAGTGAGGAAAAAGCAGTTCATGAGCATGTGAGGAAGTGATAGAGTCAGAAACAAAATCTTGAAGAGAAAGCTCATGCATGAAAACTCGGCCATGCTGAATACGCAGGGATACAAATTACGAATTAACATTCAATTTAATGCACTCTGCAGAAGTGTTGTAACTTTGTGGTTTTGTAAACCATATTGCATTGTCACCAGCATGAATCAGTTGCAATGCACTATGGGACATTTTGTCTTGCTTGATAGTCTGTTGTTTAAACTTACACTACTAAATTCGCAAAATAAAGTGGATCATACATTAGCATTTTAAGGGATTATCTGAACACACGCTAAATTTTTGATAAAGCCTATTCAGTAAGTGTGCTTATTATGTACACTTATTAGTAAGTCTGAGTTTTCATCCATGGCCAGAGAGagatgtaaacttttttttaggtTACACAAAGAACCAAAAAATAAGGAAATCCTCTGCAAGGTTGTTTACAAAAGTATTTACTTCTCTTTTAGAATAATTTCTTAATGGGAAAATTTCTTCATGAAAAATTTCCATGCTCtaattgaatgaaaaataatgtgaaaCCGAACTTTTGGTAAATATCTGAATCATGTATTTTTCAATTtacatggtttttttttagacacttcataaaatatgtttcacatattttcacatgtggacttttcacatgtagtgcatgtgttttgtttgtgtgtgtgtgtttttttttaacagatgattaatttattttcatatgtgaaCTCTTCACATGTGAATATGTGATAAGGGGGATTCCACCATACAGAAACAGTGAGAGGAAGTCAACAAGCATGTTGTAAACACTACTTGGAACAGAGCCATTGTGTCAAAACTGACATCTGTTGAAATACTTGCACTAGAGCGAATGACTATCAGTGCTCATTAAAAAGCCAATGACAATCATTAACAGTTATGCATCTTGAATTTTCATAATGACTTAAAAAGCACTTGACAATCCAAAGTTTCTCATCACTGCTTTTTGCCCCAAAACATTATCATGCTTTAATTCCTTCTGTAATTTGATTAGaaaatatatttgatatttattcatatttttgccatattctGTGTGACCATCTTTAAATGCTAGGATTTCTGATCTGTGTACTCCTTTTCGTATATACTCATTAAATCTGTGAATGTGTacatatgtgcatgtgtgtgttggagggcTCATTAAATCTGTGAATGTGTACagatgtgcatatgtgtgttggAGGGCAGGAATGCAATGCAATTGTTTTTTGTGTAAGGATCAAAAAGGTGTCTTTTTCCTGCAGTCAACCTATTTTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU226663 lncRNA upstream 6550 5722829 ~ 5723604 (+) True G191472
TU226561 lncRNA upstream 57659 5672142 ~ 5672495 (+) True G191387
TU226560 lncRNA upstream 58902 5671014 ~ 5671252 (+) True G191386
TU226549 lncRNA upstream 62552 5596722 ~ 5667602 (+) True G191375
TU226496 lncRNA upstream 111046 5614407 ~ 5619108 (+) True G191329
TU226695 lncRNA downstream 32004 5772900 ~ 5776010 (+) True G191497
TU226794 lncRNA downstream 165568 5906464 ~ 5908176 (+) True G191568
TU226819 lncRNA downstream 199725 5940621 ~ 5940847 (+) True G191588
TU226822 lncRNA downstream 205329 5946225 ~ 5948586 (+) True G191591
TU226826 lncRNA downstream 260172 6001068 ~ 6055205 (+) True G191595
XM_026915490.2 mRNA upstream 40573 5682041 ~ 5689581 (+) True mapk7
XM_026914970.2 mRNA upstream 64187 5626391 ~ 5665967 (+) True LOC113527309
XM_026914933.2 mRNA upstream 230409 5494906 ~ 5499745 (+) True tbx6
XM_026915824.2 mRNA upstream 245477 5477331 ~ 5484677 (+) False nif3l1
XM_026914736.2 mRNA downstream 5977 5746873 ~ 5766384 (+) True mmp25b
XM_026914737.2 mRNA downstream 5977 5746873 ~ 5766384 (+) False mmp25b
XM_026915189.2 mRNA downstream 200053 5940949 ~ 5964560 (+) True kansl1a
XM_026915142.2 mRNA downstream 282871 6023767 ~ 6061324 (+) True scn4aa
XM_026915143.2 mRNA downstream 282871 6023767 ~ 6061324 (+) False scn4aa
TU226411 other upstream 389591 5337253 ~ 5340563 (+) False LOC113527051
TU225934 other upstream 890785 4755097 ~ 4839369 (+) False G190865
TU225847 other upstream 1135041 4593107 ~ 4595113 (+) False lrrc18b
trnae-cuc_25 other upstream 1296842 4433241 ~ 4433312 (+) True trnae-cuc_25
TU225438 other upstream 1947659 3782131 ~ 3782495 (+) False rasd1
TU226808 other downstream 228847 5969743 ~ 5983237 (+) True G191581
trnas-gcu_1 other downstream 474949 6215845 ~ 6215926 (+) True trnas-gcu_1
trnal-aag_2 other downstream 475471 6216367 ~ 6216448 (+) True trnal-aag_2
trnal-uag other downstream 481821 6222717 ~ 6222798 (+) True trnal-uag
trnas-gcu_2 other downstream 482640 6223536 ~ 6223617 (+) True trnas-gcu_2

Expression Profile