Item | Value |
---|---|
RNA id | TU226870 |
length | 523 |
lncRNA type | inter_gene |
GC content | 0.46 |
exon number | 3 |
gene id | LOC113527731 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_047606.1 |
NCBI id | CM018552.1 |
chromosome length | 26563515 |
location | 5935539 ~ 5938213 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
species | striped catfish (Pangasianodon hypophthalmus) |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU226700 | lncRNA | downstream | 159633 | 5768528 ~ 5776020 (-) | False | LOC113527291 |
TU226688 | lncRNA | downstream | 195454 | 5739978 ~ 5740199 (-) | True | G191490 |
TU226656 | lncRNA | downstream | 246085 | 5688594 ~ 5689568 (-) | True | G191468 |
TU226652 | lncRNA | downstream | 265900 | 5667884 ~ 5669753 (-) | True | G191464 |
TU226650 | lncRNA | downstream | 267807 | 5666173 ~ 5667846 (-) | True | G191463 |
TU227047 | lncRNA | upstream | 280543 | 6218706 ~ 6219394 (-) | True | G191762 |
TU227049 | lncRNA | upstream | 281649 | 6219812 ~ 6220381 (-) | True | G191763 |
TU227058 | lncRNA | upstream | 313259 | 6251422 ~ 6252182 (-) | True | G191772 |
XR_004579134.1 | lncRNA | upstream | 321702 | 6259865 ~ 6261598 (-) | True | LOC117598466 |
TU227074 | lncRNA | upstream | 352248 | 6290411 ~ 6290912 (-) | True | G191786 |
XM_034309639.1 | mRNA | downstream | 3128 | 5910434 ~ 5932525 (-) | False | si:ch211-255p10.4 |
XM_034309638.1 | mRNA | downstream | 3128 | 5910434 ~ 5932525 (-) | True | si:ch211-255p10.4 |
XM_034309641.1 | mRNA | downstream | 3129 | 5910434 ~ 5932524 (-) | False | si:ch211-255p10.4 |
XM_034309640.1 | mRNA | downstream | 3129 | 5910434 ~ 5932524 (-) | False | si:ch211-255p10.4 |
XM_026914580.2 | mRNA | downstream | 32168 | 5885505 ~ 5903485 (-) | True | prr12a |
XM_026914823.2 | mRNA | upstream | 31573 | 5969736 ~ 6000168 (-) | False | mapta |
XM_026914822.2 | mRNA | upstream | 31573 | 5969736 ~ 6000168 (-) | False | mapta |
XM_026914818.2 | mRNA | upstream | 31573 | 5969736 ~ 6000168 (-) | False | mapta |
XM_026914812.2 | mRNA | upstream | 31573 | 5969736 ~ 6000168 (-) | False | mapta |
XM_026914817.2 | mRNA | upstream | 31573 | 5969736 ~ 6000168 (-) | False | mapta |
TU226699 | other | downstream | 159633 | 5768528 ~ 5776020 (-) | False | LOC113527291 |
TU226617 | other | downstream | 321699 | 5611120 ~ 5613954 (-) | True | G191430 |
trnav-uac_7 | other | downstream | 462183 | 5473398 ~ 5473470 (-) | True | trnav-uac_7 |
trnai-uau_5 | other | downstream | 633448 | 5302113 ~ 5302205 (-) | True | trnai-uau_5 |
TU226226 | other | downstream | 872258 | 5059527 ~ 5063395 (-) | False | LOC113527048 |
XR_004579320.1 | other | upstream | 609908 | 6548071 ~ 6594390 (-) | False | itga3b |
trnap-agg_9 | other | upstream | 2520164 | 8458327 ~ 8458396 (-) | True | trnap-agg_9 |
trnal-uag_3 | other | upstream | 2537096 | 8475259 ~ 8475340 (-) | True | trnal-uag_3 |
XR_004579166.1 | other | upstream | 2909499 | 8847662 ~ 8857748 (-) | False | si:dkey-94l16.4 |
trnaa-ugc_6 | other | upstream | 3138626 | 9076789 ~ 9076860 (-) | True | trnaa-ugc_6 |