RNA id: TU226872


Basic Information

Item Value
RNA id TU226872
length 573
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC113527731
representative False

Chromosome Information

Item Value
chromosome id NC_047606.1
NCBI id CM018552.1
chromosome length 26563515
location 5935539 ~ 5938213 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGACTGCCTGTATAAATATGCATCCTCtcacgtgttttttttttgtgaagaacTTTTCCTAGCTCACCAAGTCTCctgcactctttctctctctctctctctcttacaaaCAGATAGAACCCAGAGATGCCTGAGTCTGCAGACGTTCCTGCTCAGTGCCAAGTCCTCAAAGAAGAGGTGGATAAATGTGTCCAAGGGAAGGGCGCAGAGGCCTGTAAGGAGCTGATGGAAGCTTTCGAGGCCTGTGTGAAAAGTGCCGTGGAAGCTTCATGAGAAGAAAACTTCAGGTTCATACCAAAGGTCCTCTTTCTTCGGGTCCTTCAGTATCCCTGCATTCCCTACTGCATTTTGCGTTGGACTGGACCATTAGAAAGACTGGCCAGGGGTGTTGGTGCTGCCAGATTCTTGGATTTGCTTTGTCTGGATCAGAGATGCCTCAATGATGGCTCTGAAATTATTGTCAATGTCCTATGCAAATGTAGCAGCAAGAGCCCACGGGATTTAGATCCAATATGTCAGAACAAGTATTTCTTTATCTAAGAAAAATGCAGTTCATATAAATGATTTTGgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU226700 lncRNA downstream 159633 5768528 ~ 5776020 (-) False LOC113527291
TU226688 lncRNA downstream 195454 5739978 ~ 5740199 (-) True G191490
TU226656 lncRNA downstream 246085 5688594 ~ 5689568 (-) True G191468
TU226652 lncRNA downstream 265900 5667884 ~ 5669753 (-) True G191464
TU226650 lncRNA downstream 267807 5666173 ~ 5667846 (-) True G191463
TU227047 lncRNA upstream 280493 6218706 ~ 6219394 (-) True G191762
TU227049 lncRNA upstream 281599 6219812 ~ 6220381 (-) True G191763
TU227058 lncRNA upstream 313209 6251422 ~ 6252182 (-) True G191772
XR_004579134.1 lncRNA upstream 321652 6259865 ~ 6261598 (-) True LOC117598466
TU227074 lncRNA upstream 352198 6290411 ~ 6290912 (-) True G191786
XM_034309639.1 mRNA downstream 3128 5910434 ~ 5932525 (-) False si:ch211-255p10.4
XM_034309638.1 mRNA downstream 3128 5910434 ~ 5932525 (-) True si:ch211-255p10.4
XM_034309641.1 mRNA downstream 3129 5910434 ~ 5932524 (-) False si:ch211-255p10.4
XM_034309640.1 mRNA downstream 3129 5910434 ~ 5932524 (-) False si:ch211-255p10.4
XM_026914580.2 mRNA downstream 32168 5885505 ~ 5903485 (-) True prr12a
XM_026914823.2 mRNA upstream 31523 5969736 ~ 6000168 (-) False mapta
XM_026914822.2 mRNA upstream 31523 5969736 ~ 6000168 (-) False mapta
XM_026914818.2 mRNA upstream 31523 5969736 ~ 6000168 (-) False mapta
XM_026914812.2 mRNA upstream 31523 5969736 ~ 6000168 (-) False mapta
XM_026914817.2 mRNA upstream 31523 5969736 ~ 6000168 (-) False mapta
TU226699 other downstream 159633 5768528 ~ 5776020 (-) False LOC113527291
TU226617 other downstream 321699 5611120 ~ 5613954 (-) True G191430
trnav-uac_7 other downstream 462183 5473398 ~ 5473470 (-) True trnav-uac_7
trnai-uau_5 other downstream 633448 5302113 ~ 5302205 (-) True trnai-uau_5
TU226226 other downstream 872258 5059527 ~ 5063395 (-) False LOC113527048
XR_004579320.1 other upstream 609858 6548071 ~ 6594390 (-) False itga3b
trnap-agg_9 other upstream 2520114 8458327 ~ 8458396 (-) True trnap-agg_9
trnal-uag_3 other upstream 2537046 8475259 ~ 8475340 (-) True trnal-uag_3
XR_004579166.1 other upstream 2909449 8847662 ~ 8857748 (-) False si:dkey-94l16.4
trnaa-ugc_6 other upstream 3138576 9076789 ~ 9076860 (-) True trnaa-ugc_6

Expression Profile